Open Source Heartbeat: Open Source Heartbeat

Open Source Heartbeat

tzanio commented on issue mfem/mfem#5019.

This PR is now under review (see the table in the PR description). To help with the review process, please do not force push to the branch….

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vsoch commented on issue kubeflow/trainer#3179.

@roberthluo the MPI test uses a wantinfo object to do comparison. The current flux tests do not. Here is the initial discussion:…

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markcmiller86 open issue visit-dav/visit#20987.

node_coords/X and node_coords/Y wrong for parallel decomposed Pixie

### Describe the bug…View Comment

v-dobrev commented on issue mfem/mfem#5346.

Hi @nmnobre, @najlkin, @tzanio, @helloworld922, …

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grondo open issue flux-framework/flux-pam#25.

`user@UID.service` fails to start with hidepid=2 and cgroupv2

On systems where /proc is mounted with hidepid=2 andsystemd.unified_cgroup_hierarchy=1 is set, user@UID.service fails to startfor users who are not members of the group whitelisted for /proc visibility (on TOSS, iseepids)….View Comment

garlick commented on issue flux-framework/flux-core#7659.

Oh, maybe I was looking at the same failure b/c mergify just merged this! NM….

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jeremylt commented on issue CEED/libCEED#1980.

Ah the correct fix is probably to update the libCEED hash PETSc is using …

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vsoch commented on issue urlstechie/urlchecker-python#95.

Spam…

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alecbcs commented on issue spack/spack-packages#5083.

Cool! Let’s just make sure we document that variable and alternatively script modifications for the release notes….

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becker33 commented on issue spack/spack#52492.

@haampie yes that was my plan…

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tgamblin commented on issue spack/spack#52397.

Agree! We are working on revamping the site – see what you think of https://id-preview–a538ff6f-a974-428e-b9b8-9b6a19dda20c.lovable.app (note that this is valid for only 7 days) which is a preview of how we think the site will eventually work….

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jandrej commented on issue mfem/mfem#5338.

I wrapped up the changes in #5232 and waiting for reviews. I’ll keep this open until the other PR is merged….

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jameshcorbett commented on issue flux-framework/flux-sched#1490.

Anecdotally, the error seems to occur when a user requests more nodes than there are rabbits in the system. The --coral2-chassis flag may help reduce the error rate by constraining node placements to fewer chassis. The error seems to have occurred around the time we switched clusters to using the firstnodex match policy….

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grondo open issue flux-framework/flux-core#7660.

`flux job attach` gets `ENOSYS` from `.proctable` 10 minutes into job</p>A user reported a mysterious failure of STAT on their job 10 minutes into its run: `flux job attach` failed with `Function not implemented` while the job was apparently running....View Comment

chu11 commented on issue flux-framework/flux-core#7656.

> This is why I’d suggested a few “safe” tests get ci=asan markers or something like ci=system. …

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hppritcha commented on issue open-mpi/ompi-www#559.

@edgargabriel ping…

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hppritcha commented on issue open-mpi/ompi#13598.

i’d say this is worth a try. anyway it looks like coverity has gone on an extended vacation. maybe codeql could provide some of the capabilities that we used to get with coverity?…

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cjvogl commented on issue mfem/mfem#4244.

> Regarding testing, it is easy in the way the bug appears at many places

balos1 closed issue llnl/sundials#937.

XXXGetRootInfo in sundials4py not setting rootsfound values

Dear developers,…View Comment

adrienbernede commented on issue llnl/radiuss-spack-configs#176.

@kab163 @adayton1 Thank you for that. Replacing was the right move….

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garlick commented on issue flux-framework/flux-sched#1497.

Just pushed the change to select the reader using hints from R.scheduling.writer. It looks like only rv1exec (no schedluing key) actually works with partial cancel presently - fine for now since that’s what the job manager will generate….

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jameshcorbett commented on issue flux-framework/flux-multi-cluster-utilities#22.

Another example would be a timeout exception. If the job times out, we definitely shouldn’t retry. Otherwise we wouldn’t be respecting the time limit restrictions placed on the job….

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cmoussa1 commented on issue flux-framework/flux-accounting#878.

I’ve rebased this to catch up after #880 - I’ll go ahead and set MWP here. Thanks again for reviewing this @jameshcorbett! …

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cyrush commented on issue visit-dav/visit#20972.

@biagas thanks for confirming!…

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cjvogl closed issue pnnl/SPAECIES#51.

Potential bug in gradient computation for "gamma" rain fall speeds

I believe there is a bug in the computation of the rain number fall speed derivatives using the “non-numerical” approach. Leveraging that…View Comment

bgunnar5 open issue microsoft/agent-framework#6313.

Python: [Bug]: `function_invocation_configuration` from `BaseChatClient.as_agent` doesn't work

### Description…View Comment

gardner48 commented on issue llnl/sundials#884.

> I think we can change the minimum back to 3.8. I had bumped it to match sundials4py but I dont think we are using anything from 3.12 in these scripts. …

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adrienbernede commented on issue llnl/radiuss-shared-ci#67.

@davidbeckingsale This is ready. See it work in Umpire: https://github.com/llnl/Umpire/pull/1050…

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cyrush closed issue llnl/conduit#1566.

Deprecations Warning on Mac

Using the latest 26.4 XCode, the version of FMT being used by conduit (which is version 7.0) is generating deprecation warnings. Can FMT be upgraded to version 12.1.0 (which is the latest)? I have verified that this compiles cleanly on the Mac….View Comment

trws commented on issue flux-framework/flux-sched#1489.

> Also, I happened to notice b60e200 by @zekemorton which makes me question my choice to have these new functions use UP|DOWN strings instead of the enum. Which do sched developers prefer? My thinking that using the enum was unnecessarily exposing an internal data structure and that it would be easy to add another state (like DEGRADED or similar) as a string without breaking the API, but the enum is nicer to work with a Zeke points out in the commit message. …

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sam-maloney commented on issue flux-framework/flux-core#7643.

Otherwise, I’ve added the check-executables-have-shebangs pre-commit-hook and updated the config (and fixed a few additional files that the hook then flagged :grin:), so perhaps @grondo you could have a quick double-check!…

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wihobbs commented on issue flux-framework/flux-core#7354.

Completed by #7506 …

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wihobbs commented on issue flux-framework/flux-coral2#486.

If we get rid of this here, we need to add it back in ansible (note my comment in #478)…

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cyrush open issue Alpine-DAV/ascent#1727.

Normal Vector Specification

For 2D manifolds (surfaces) is there a way in Ascent/Conduit to pass in normal vectors for vertices? This is important for rendering if we want nice reflections and the normals we can get from our code are typically much nicer than what can be computed internally (we have actual curvature information)….View Comment

emily-howell closed issue Alpine-DAV/ascent#1587.

2025/07/22 tutorial feedback

- [x] tutorial landing page:…View Comment

chu11 commented on issue chaos/powerman#217.

@mergifyio rebase…

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imguoguo commented on issue BeaconCat/Pharos#1.

## Root cause references…

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markcmiller86 closed issue visit-dav/visit#2937.

build of parallel hdf5 fails if can't run a parallel program on the node building it.

I just recently tried to build parallel hdf5 (for moab) with build_visit and it failed because it couldn’t run an mpi program. This was on cab. This used to work, so they changed something on the machine, but still this seems like a short coming of their autoconf system….View Comment

v-dobrev closed issue mfem/mfem#5247.

Test failure for `ex1p_ceed_np=4`

Thank you for developing and maintaining this project….View Comment

camierjs closed issue mfem/mfem#5247.

Test failure for `ex1p_ceed_np=4`

Thank you for developing and maintaining this project….View Comment

tzanio commented on issue mfem/mfem#5349.

This PR is now under review (see the table in the PR description). To help with the review process, please do not force push to the branch….

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gardner48 commented on issue llnl/sundials#887.

Superseded by #946…

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jedbrown commented on issue jeremylt/LFAToolkit.jl#94.

With the multi-element patches, we would like the ability to do heterogenous patches with standard LFA (see Kumar, Rodrigo, Gaspar, Oosterlee 2019)….

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hppritcha open issue hppritcha/tac#1.

[Project Proposal] Open MPI

### 1. Name of Project…View Comment

vsoch open issue hpc-gridware/quickinstall#10.

Settings file to source for openSUSE

Hi! I’m going through the example here https://github.com/hpc-gridware/quickinstall/tree/main/containers/openSUSE/15.6…View Comment

grondo commented on issue flux-framework/rfc#519.

While working on the implementation for the external helper, I realized that the current spec for the Device Containment options to the IMP was incorrect. I’ve added a commit here that corrects the section to describe what is currently in use. That could use a review. …

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gardner48 commented on issue erf-model/ERF#3232.

The changes look good but two tests are now failing on one of our AMD systems with this branch: …

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markcmiller86 commented on issue betterscientificsoftware/bssw.io#2541.

We also support cases where there is not viable URL for a citation but there is full bibliographic detail available. That just means that there is no off-article link for the item in the References block….

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cyrush commented on issue Alpine-DAV/ascent#1692.

@nicolemarsaglia thanks for resolving that last puzzle!…

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cyrush commented on issue visit-dav/visit#19544.

removing reviewed b/c user reports seeing this on El Cap with 3.5.0, from linux using x11 forwarding (not sure if using x11 or wayland)…

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vsoch commented on issue oras-project/oras-py#240.

@jiwangCHEN push and pull interfaces should not go away. A push or pull is a directional copy. There should be no breaking changes in changing the underlying structure to use copy….

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adrienbernede closed issue llnl/radiuss-spack-configs#166.

CI: Rebuild index job often fails

We recurringly have failures in the reindex job…View Comment

wihobbs commented on issue flux-framework/flux-sched#1490.

It’s more stable (I’ve yet to see a rabbit allocation fail with that flag in there.) When James gets back next week we can dissect why, but for now, I think our stock advice is to allocate chassis along with any rabbit job….

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garlick commented on issue flux-framework/flux-sched#1489.

reapi.hpp was updated to include prototypes for the (string based) generic status get/set functions, with inline docs….

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milroy commented on issue flux-framework/flux-sched#1467.

I’ve verified that the errno contract violation fixes in @garlick’s PR’s #1483 and #1484 obviate the first commit in this PR. I’m dropping it. …

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vsoch closed issue flux-framework/flux-docs#193.

Command Tutorials to do

- [x] flux proxy: “I want to connect to a flux instance across clusters with ssh #192 …View Comment

grondo commented on issue flux-framework/flux-core#7644.

@kkier suggested setting allow_abbrev=False for argparse which would help in this specific case. However, the behavior we want from argparse is the POSIX behavior where option processing stops at the first non-option argument (See POSIXLY_CORRECT in getopt_long(3)). I haven’t looked in awhile, but last I checked the argparse maintainers were unwilling to implement that behavior….

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garlick commented on issue flux-framework/flux-core#7644.

Thanks for reporting this!…

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chu11 commented on issue flux-framework/flux-core#7594.

hmmm seems like “system,coverage” builder is failing. At first I thought it was just not-perfect coverage. Perhaps a system test I missed that could be affected this PR’s change. Unfortunately builder logs not most obvious on the issue, but hopefully a container will figure this out quick. Edit: oops, now I see a log file, seems like t9000 tests with 0007-fsck.t failing.

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cmoussa1 commented on issue flux-framework/flux-accounting#875.

Thanks @grondo! I’ve gone ahead and force-pushed up a fix to add a comment to accounting.hpp for those overloaded functions to explain their subtle difference from the others. I’ll go ahead and set MWP here shortly…

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garlick commented on issue chaos/powerman#216.

Looking good here so let’s merge. Thank you for running this down and for your excellent commit message! Let’s merge….

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jeremylt commented on issue CEED/libCEED#1977.

@zatkins-dev this is purely a cleanup, no functional changes, but if you aren’t familiar with what’s happening inside of this file, it’s an interesting file to poke around in…

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jandrej commented on issue zed-industries/zed#57703.

Same issue here, not sure if intended behavior….

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cyrush commented on issue spack/spack-packages#5005.

Thanks for merging!…

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hppritcha commented on issue open-mpi/ompi-tests-public#38.

hmmm please run copilot against this and see what it thinks….

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hppritcha commented on issue open-mpi/ompi#13883.

@janjust is this ready to merge?…

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balos1 commented on issue llnl/sundials#937.

@xcartoixa This should be fixed by #944. …

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wihobbs open issue flux-framework/flux-coral2#487.

`dws-setup` after flux restart on tuolumne caused rabbit jobs to fail

@ilumsden reported the following error on many jobs that were queued before a Tuolumne update, but only ran after:…View Comment

adayton1 open issue desul/desul#174.

Bitwise or value representation comparison instead of logical comparison for atomic_compare_exchange_strong

The logical comparison may not match whether the exchange actually happened in certain edge cases, NaNs for example….View Comment

vsoch commented on issue converged-computing/resource-secretary#6.

Awesome! I will test this soon….

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emily-howell commented on issue Alpine-DAV/ascent#1682.

Merged in #1676 and #1663 and changed this branch to merge into develop. @cyrush It should be ready to merge in but if you have any feedback about the error messages I can absolutely make additional changes :)…

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JustinPrivitera commented on issue llnl/conduit#1358.

TODO add a new macro for cuda + hip + umpire == CONDUIT_USE_DEVICE…

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jameshcorbett open issue flux-framework/flux-sched#1490.

Rabbit-related `match error` (EINVAL)

Making a dedicated issue for the rabbit-specific version of #1372. …View Comment

trws commented on issue flux-framework/flux-sched#1467.

I think this is good to go, something you want to do before MWP @milroy?…

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SteVwonder closed issue docker/sbx-releases#172.

Nightly release homebrew tap instructions are out-of-date

The main readme of the repo says to use:…View Comment

jedbrown commented on issue CEED/libCEED#1813.

I added change notes and I’m happy now….

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benzwick commented on issue A2B-Technology-Corporation/Talk2View-Writer#10.

Future hard-enforcement (engine-side minimum client version) tracked in A2B-Technology-Corporation/Talk2View-Platform#72….

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JustinPrivitera closed issue visit-dav/visit#20907.

Update `Common Build Scenarios` docs to not have retired systems

Update Common Build Scenarios docs to not have retired systems: https://visit-sphinx-github-user-manual.readthedocs.io/en/develop/building_visit/Common_Build_Scenarios.html…View Comment

jedbrown commented on issue blas-lapack-rs/blis-src#13.

Is there a release that contains the fix? It looks like that report came after BLIS-2.0. Have you thought about a recommended fix for blis-src?…

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tgamblin commented on issue EPCCed/cirrus-ex-spack#44.

See also https://github.com/spack/spack/pull/51891…

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jedbrown commented on issue rsmpi/rsmpi#222.

Thanks; I merged #223 because it was more complete. Sorry about the slow response….

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tzanio commented on issue mfem/mfem#5340.

@maxpaik16, is this ready-for-review (see the contributing guidelines)?…

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garlick commented on issue flux-framework/flux-sched#1481.

Now based on top of …

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jameshcorbett commented on issue flux-framework/flux-sched#1372.

The jobspec-update events look the same? I’m on my phone but am I missing something?…

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hppritcha commented on issue open-mpi/ompi#13911.

looks like there’s a failure making the tarballs for main and v6.0.x owing to some changes to the way docs are generated….

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gardner48 commented on issue llnl/sundials#938.

The different versioning is a historical holdover from CVODE, IDA, and KINSOL predating SUNDIALS then IDAS and ARKODE getting added later. The versions have all been updated in lockstep with the SUNDIALS version for a while now, so moving to a single version number for everything would be reasonable. …

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balos1 commented on issue llnl/sundials#938.

Should we consider just syncing up the IDAS and ARKDOE versions with the rest of SUNDIALS? I see no real advantage of having them differ. …

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alecbcs commented on issue llnl/hubcast-test#5.

@lc-hubcast help…

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alecbcs open issue llnl/hubcast#115.

Support Gitlab to Gitlab topology

## Problem/Opportunity Statement…View Comment

JustinPrivitera open issue llnl/conduit#1151.

use cases + strawman interface to raja based host device exec interface

```cpp …View Comment

trws commented on issue llnl/camp#199.

Wow, that’s clearly a mistake on my part. Would you like to put that up as a PR so you get credit for it?…

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trws commented on issue flux-framework/flux-sched#1467.

> I also expect we will need to consider how units are represented to avoid string comparisons…

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milroy commented on issue flux-framework/flux-sched#1483.

> P.s. there are more of this type of problem in the planner code. …

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wihobbs commented on issue flux-framework/flux-core#7586.

Oops. I think this will do it: …

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grondo commented on issue flux-framework/flux-core#7586.

Hm, getting these errors when this branch was merged to master: …

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chu11 commented on issue flux-framework/flux-core#7622.

thanks, will set MWP…

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gardner48 commented on issue dealii/dealii#19729.

@bangerth thanks for bringing this to our attention. @vovannikov sorry for the confusion, llnl/sundials#938 should make this clearer. …

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jeremylt commented on issue CEED/libCEED#1970.

uggggghhhhhh…

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JustinPrivitera commented on issue visit-dav/visit#20959.

> As a reminder, most of the changes here were reviewed in smaller chunks as PRs for merge into this branch. …

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markcmiller86 commented on issue visit-dav/visit#20961.

@biagas I have tested this locally and with this invokation of build_visit

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