Open Source Heartbeat: Open Source Heartbeat

Open Source Heartbeat

v-dobrev commented on issue mfem/mfem#5436.

@najlkin, just to clarify, do you have an alternative solution you want to propose?…

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JustinPrivitera commented on issue visit-dav/visit#20950.

The issues pointed out here should be resolved by https://github.com/llnl/conduit/pull/1670…

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tzanio commented on issue mfem/mfem#5399.

Thanks, @pazner !…

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cyrush commented on issue llnl/conduit#1670.

This error means a memory access crime was committed: …

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garlick commented on issue flux-framework/flux-rest-server#9.

Although we may not have machinery built for OpenAPI from the beginning, using OpenAPI as a specification language (for example in an RFC) as recommended here[1] seems like a good idea!…

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grondo commented on issue flux-framework/flux-core#7753.

Thanks! I’ll set MWP here….

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v-dobrev commented on issue spack/spack-packages#143.

> @v-dobrev @hughcars edits make a lot of sense to me. Not sure how much progress you made. Do you want to apply these changes? …

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vsoch commented on issue oras-project/oras-py#249.

This looks good @tomatotomata - a simple and reasonable change. Please see the DCO requirements here: https://github.com/oras-project/oras-py/pull/249/checks?check_run_id=92784221176…

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JustinPrivitera commented on issue llnl/conduit#1111.

jeff gave me some files with species sets. They live here: /usr/workspace/justin/files_from_jeff. More information in his email….

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adayton1 commented on issue llnl/Umpire#1105.

Should we make this a patch release or do that in a separate PR?…

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artv3 commented on issue llnl/RAJAPerf#656.

@llnl/raja-core are we good to go? …

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artv3 commented on issue llnl/RAJA#2021.

Thanks @rchen20 , I addressed your review comments…

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adayton1 commented on issue llnl/RAJA#448.

There’s no critical section anymore. We now use #pragma omp atomic capture compare from OpenMP 5.1 if it is available, otherwise fall back to the built in case with the early exit. Closing and we will open a new issue if/when performance becomes an issue again….

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adayton1 commented on issue llnl/CHAI#382.

Waiting on an Umpire patch release with some CMake fixes….

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imguoguo commented on issue imguoguo/sipeed_wiki#1.

Verification done: the pull_request trigger fired and the build passed. Closing….

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jameshcorbett open issue flux-framework/flux-sched#1544.

Rabbit jobs unsatisfiable on ElCap; degradation of state

Offline, @behlendorf noted:…View Comment

trws commented on issue flux-framework/flux-sched#1544.

Ok, clearly we have some digging to do here. The sitting in sched forever issue would normally mean something like there being too many elements in down state to schedule the job, or otherwise held onto. It would be good to get a snapshot of the state of the agfilters and rabbits if we can, I think find can do that. Anything that could let us see if there’s some inconsistent state would be good, because while the hung sched state could be things being down, the unsatisfiable result should only be if there flat isn’t enough hardware accessible at this point….

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cmoussa1 open issue flux-framework/flux-accounting#933.

docs: update relevant job usage documentation

Add and update all documentation relevant to to the new job usage calculation mode, available options to witch to exponential, add guides on how this is different from current job usage calculation, etc….View Comment

vsoch commented on issue converged-computing/fluxq#7.

For a GitHub box you seem a little misinformed about how GitHub works……

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jeremylt commented on issue CEED/libCEED#2002.

The associated issue is intended for students to work on - not mass automated submissions…

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jeremylt commented on issue 4C-multiphysics/4C#2136.

Last push was just a small tweak to improve debugging/logging output for the future, no logical changes to this PR that effect reviewability …

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markcmiller86 commented on issue visit-dav/visit#20982.

I am recording here, as a note to self, the interpretation of the contents of pixie3d4.h5 test data file as arrived at by ChatGPT after I uploaded the file there and asked some key questions. …

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imguoguo open issue sipeed/sipeed_wiki#1003.

[Gitalk:/hardware/en/kvm/NanoKVM_Go/system/introduction.html] System Build - Sipeed Wiki

https://wiki.sipeed.com/hardware/en/kvm/NanoKVM_Go/system/introduction.html …View Comment

hppritcha open issue open-mpi/ompi#14291.

ABI: need to add in some plumbing for MPI T event callback object types

We need to add in some plumbing for recently introduced MPI T events in order to support the MPI ABI (PR #14083)…View Comment

balos1 open issue llnl/sundials#957.

[BUG] arkInitialSetup fails with embedding order < 1 for methods with no embedding

### Current Behavior:…View Comment

bgunnar5 open issue llnl/mada-tools#50.

Infrastructure to Support PTC

We need infrastructure in place to support Programmatic Tool Calling (PTC) since people are beginning to utilize this in place of MCP at times….View Comment

cyrush commented on issue llnl/axom#1944.

Looks like the error is where hdf5 public does #include <mpi.h>

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BradWhitlock commented on issue llnl/axom#1944.

Maybe axom was not told to build with MPI but some 3rd party includes it? I wonder whether #undef MPI_COMM_SELF there would work around it….

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adrienbernede commented on issue llnl/RAJAPerf#688.

> > So this is Spack hitting again: failing to enforce a coherent compiler throughout the stack… …

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hppritcha commented on issue hpsfoundation/tac#93.

Finally got a LANL publication number for the presentation given on 7/23/26…

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wihobbs commented on issue flux-framework/flux-sched#1517.

I just want to express how happy this makes me: …

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tpatki open issue flux-framework/flux-rest-server#13.

rest-server: MCP server as an agent-driven example integration

Problem: no example exists showing flux-rest-server used as the…View Comment

grondo commented on issue flux-framework/flux-rest-server#5.

> The usual flux image (fluxrm/flux-core) doesn’t work, I already tried that (I had started there). That image places you directly in a shell as a user and we need a persistent system level flux instance, along with some services that need to be enabled (also didn’t work for systemd). …

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grondo commented on issue flux-framework/flux-accounting#927.

> I get nervous that this plugin starts to inch closer and closer to becoming another scheduler….

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emily-howell commented on issue Alpine-DAV/ascent#1027.

This has been merged in with #1691 …

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balos1 commented on issue spack/spack-packages#4090.

> @balos1, at least the first few finding of the review are valid blockers or bugs for a merge. …

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btalamini commented on issue llnl/smith#1638.

I see you’ve changed the convention by putting the 2*pi factor in. I’ve seen both with and without in codes – either works – but the convention should be communicated to the user. For example, they need to know whether to supply tractions as force per unit length, or force per unit length and per radian….

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alecbcs commented on issue llnl/repligit#211.

Going to close this and re-create and built on top of other smaller PRs…

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bgunnar5 open issue llnl/mada#50.

Improvements to Logging

Logging is only set up for Gradio at the moment (see here). However, it should be enabled for both CLI and OpenAI API modes too. Additionally, logging should be able to be set via the command line for all interfaces. For example: mada-cli --log-level DEBUG config.jsonView Comment

adayton1 commented on issue llnl/RAJAPerf#688.

I believe cray-mpich 9.1.0 requires at least ROCm 7. But 9.0.1 should work with ROCm 6….

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chu11 commented on issue flux-framework/flux-core#7730.

re-pushed, doing some minor tweaks per comments above. …

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garlick commented on issue flux-framework/flux-accounting#924.

I guess it goes without saying that withholding jobs from the scheduler prevents the scheduler from considering them in planning, for example in the backfill algorithm….

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adrienbernede commented on issue spack/spack-packages#5870.

@adayton1 github mistakenly attributed your suggestion to myself. I owe you one ;)…

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adrienbernede commented on issue spack/spack#52668.

@kwryankrattiger @haampie, although this is not a urgent matter, I

sam-maloney commented on issue flux-framework/flux-sched#990.

OK, that makes sense; thanks for the explanation!…

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garlick commented on issue flux-framework/flux-core#7760.

Possibly stale issues:…

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sam-maloney commented on issue flux-framework/flux-core#7747.

The underlying problem is now fixed by https://github.com/flux-framework/flux-pmix/pull/136…

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tpatki closed issue flux-framework/PerfFlowAspect#164.

Add support for Adiak Data

- [ ] Add an example smoketest with Adiak …View Comment

jandrej commented on issue EnzymeAD/Enzyme#3066.

> In particular, we must build MPI with the same compiler version….

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tzanio commented on issue mfem/mfem#5434.

> I don’t have permission to make label changes. …

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hppritcha commented on issue spack/spack-packages#4291.

well i keep approving then someone does some other changes then i have to review again. …

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tgamblin commented on issue spack/spack#52815.

@map0te I’m not sure whether this or #52806 is the right place to do this, but I think (and I suspect @becker33 and @alalazo agree) that we should just get rid of the duplicative criteria between roots and non-roots, and have a consistent set that’s ordered the same way for l0, 1, 2, etc. I think this is the right thing to do … keeping the irregularity above is hard to understand and I suspect we don’t need it….

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dylan-copeland commented on issue mfem/mfem#5426.

@najlkin Is there an example that uses this new feature? Should a sample run be added to some example or miniapp, since a unit test is not added?…

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grondo commented on issue flux-framework/rfc#544.

Ok, now based on top of #545. A leading + is added to automatic queue properties. This indicates a property has been auto-assigned by Flux and need not be copied into R objects generated for allocations….

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milroy commented on issue flux-framework/flux-sched#1387.

The PR looks ready to merge to me, but I’d like either @trws or @jameshcorbett to weigh in before setting MWP….

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imguoguo commented on issue sipeed/NanoKVM#844.

typo: reduce

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hppritcha commented on issue open-mpi/ompi#14229.

@N00byKing could you rebase on top of main? #14216 is merged into main now….

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camierjs commented on issue mfem/mfem#5317.

Conflicts resolved….

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JustinPrivitera commented on issue llnl/conduit#1661.

TODO add new function to API with a note and then write tests for it that trigger the errors….

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BradWhitlock commented on issue llnl/axom#1928.

I have questions / comments for Monday….

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adayton1 commented on issue llnl/Umpire#1101.

> @adayton1 - do you think this would resolve the cmake target issues? …

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adrienbernede commented on issue llnl/RAJA#1647.

This was replaced by #2030…

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eleon commented on issue hpc/quo-vadis#556.

It would be nice to document -DROCmSMI_HOME in the Build Options sections of the main README. …

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garlick commented on issue flux-framework/flux-rest-server#7.

> do we want the REST schema coupled to (and silently versioned by) a flux-core binding signature, or do we want a curated, documented field set that we control and can keep stable across flux-core releases? …

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garlick commented on issue flux-framework/flux-pmix#134.

@sam-maloney does your team want to take this? If you’re lacking critical mass there due to the holidays I’m happy to do it to keep things moving….

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grondo commented on issue flux-framework/flux-core#6567.

Maybe the right move is to fix #4310 first regardless of any decision here. This prepares the job manager for proper multi-queue support whether using multiple allocators or not….

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garlick commented on issue flux-framework/flux-core#6567.

> What is the single allocator per queue invariant solving exactly? Are there issues with the multiple priority queues per scheduler implementation that can’t be solved? Is there really no reason to have both?…

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cmoussa1 commented on issue flux-framework/flux-accounting#917.

Thanks @jameshcorbett! I think I’ve addressed your catch above and have force-pushed up the changes…

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jeremylt commented on issue 4C-multiphysics/4C#2012.

Sounds good, just wanted to check in since I merged your branch into mine for testing purposes …

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JustinPrivitera commented on issue visit-dav/visit#20291.

> @JustinPrivitera how does this look?…

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cyrush commented on issue visit-dav/visit#20246.

We need to test this in VisIt 3.5.0…

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balos1 closed issue llnl/sundials#976.

max local size

What is the upper limit on the local problem size? I’m just trying to understand whether it’s limited by the maximum value of an unsigned int or something similar….View Comment

adrienbernede commented on issue llnl/radiuss-spack-configs#195.

@smithsg84 this is precisely the type of use case with will help with. I’m going to merge now and update the RAJA PR so that it’s ready for merge as well….

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bgunnar5 commented on issue llnl/mada#17.

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adayton1 commented on issue llnl/axom#1933.

I’ve used the following flags to disable the stack size warnings: -Xptxas –suppress-stack-size-warning -Xnvlink –suppress-stack-size-warning…

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markcmiller86 commented on issue llnl/Silo#567.

Resolved on 4.12RC in #568 and on main in #569…

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samuelkgutierrez commented on issue hpc/quo-vadis#556.

@eleon please give this update a try on your system….

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tpatki open issue flux-framework/flux-rest-server#8.

rest-server: option to recreate shell login environment in job-submit API

Follow-up from PR #7: current cwd/environment defaults are minimal…View Comment

cyrush commented on issue Alpine-DAV/ascent#1748.

the windows errors look like images diffs above threshold, I can build on windows and take a look…

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jedbrown commented on issue openjournals/joss-reviews#9333.

Looks good. At this point, please proceed to:…

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jandrej commented on issue mfem/mfem#5421.

I can see how this makes sense in a downstream application. For mfem as is, I don’t understand the refactor. What part of the code keeps you from doing this internally?…

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chu11 commented on issue flux-framework/flux-core#7730.

> The kernel doesn’t queue those signals so I assume we don’t need to. …

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sam-maloney commented on issue flux-framework/flux-core#7747.

Perhaps I’ll leave this open for now, but once https://github.com/flux-framework/flux-pmix/issues/134 is resolved, that seems like it would be the “canonical” fix, then this can presumably be closed as other plugins should use the same logic….

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chu11 open issue chu11/freeipmi-mirror#82.

lan20: do get channel cipher suites check

Some vendors apparently dropped support for cipher suite 3. It might be nice to check if the chosen cipher suite is supported before establishing a connection….View Comment

garlick commented on issue ParaStation/psmpi#8.

> If Flux actually enables both interfaces at runtime if both are installed, this should IMHO be changed in Flux to selecting one of the two available interfaces per job…

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sam-maloney commented on issue ParaStation/psmpi#8.

> If Flux actually enables both interfaces at runtime if both are installed, this should IMHO be changed in Flux to selecting one of the two available interfaces per job - like Slurm does with the --mpi option on srun

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v-dobrev commented on issue mfem/mfem#5405.

Merged in next for testing……

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mplegendre commented on issue llnl/Spindle#196.

@rountree - Are you working on fixing the CI failures?…

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artv3 open issue llnl/RAJA#2066.

RAJA policy audit:

> As a quick audit: …View Comment

wihobbs commented on issue flux-framework/flux-sched#1015.

I updated the title here, which I think might’ve been stale. Fluxion currently provides t_estimates for all jobs that enter the RESERVED state, up to the reservation or queue depth (whichever limit is hit first). In the case of the easy policy, this is just one job. In the case of conservative/hybrid policies, this ability is expanded….

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sam-maloney open issue easybuilders/easybuild-easyblocks#4188.

Bundle does not run postinstallcmds

As far as I can tell, the bundle EasyBlock does not run any postinstallcmds, but just silently ignores them. The only way I can currently see to run such commands “post install” is to abuse the sanity_check_commands……View Comment

vsoch commented on issue rse-ops/flux-compose#4.

If we put an arbitrary large number there we don’t need to rebuild - they will just appear as down. What do you think?…

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vsoch commented on issue kubernetes/enhancements#2033.

Usernetes, of course!…

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markcmiller86 commented on issue betterscientificsoftware/bssw.io#2563.

> What if we don’t link SSF at all where it appears in the body and just let the MIF link carry all of the responsibility? …

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cyrush commented on issue Alpine-DAV/ascent#1732.

@nicolemarsaglia does this resolve#1725?…

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alecbcs commented on issue spack/spack-packages#5621.

@spackbot run pipeline…

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tgamblin commented on issue spack/spack#52780.

Curious, what’s the performance improvement you’re seeing?…

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balos1 commented on issue spack/spack#52762.

> I would take a step back: filter: is very generic for a niche feature. Can’t you do spack env create --filter filter.yaml? Does it even compose for your spack config get idea? I’m sure there are ambiguities regarding what filter refers to if you have includes/stacking. …

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becker33 commented on issue spack/spack#52769.

@haampie I’ve rebased this and confirmed that it overwrites the package hash appropriately. …

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jedbrown commented on issue openjournals/joss#1563.

I agree with @sneakers-the-rat. Automation bias is strong in this context and LLMs embody biases that the editor may not even be aware of. “Accuracy” in historical decisions does not imply validity. If we were to deploy this and then audit the resulting system, we would almost certainly find a lack of construct validity and that “bad” recommendations from the LLM unacceptably influenced decisions. I think it also violates trust of authors and the broader community, and cheapens the meaning of a JOSS publication. …

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