Open Source Heartbeat: Open Source Heartbeat

Open Source Heartbeat

JustinPrivitera commented on issue visit-dav/visit#20154.

Can we reschedule this ticket for a later release now that we have addressed mili?…

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v-dobrev commented on issue mfem/mfem#4757.

Re-merged in next for testing……

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tzanio commented on issue mfem/mfem#4909.

This PR is now under review (see the table in the PR description). To help with the review process, please do not force push to the branch….

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trws commented on issue flux-framework/flux-core#6704.

The first thing that went through my mind on this is we could use json patch formatted content. Jansson doesn’t support it natively, but there are examples around the internet for supporting it with anything that has a json_pointer_set or similar. There are a number of tools that can work with or produce it, like a diff output for json in general, so it would likely end up useful other places too. …

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balos1 commented on issue LLNL/sundials#732.

I found a workaround with the generator, so this is not needed anymore….

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cmelone open issue LLNL/hubcast#146.

Add tests

## What would success / a fix look like?…View Comment

BradWhitlock commented on issue LLNL/axom#970.

I added ArrayView::fill() in an earlier PR so I’ll finish this one….

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tpatki commented on issue spack/spack-packages#148.

@slabasan …

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vsoch commented on issue singularityhub/singularity-hpc#670.

If you have interest! I didn’t comment because it’s marked as a Draft. Let me know when it’s ready for review….

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jedbrown commented on issue rsmpi/rsmpi#209.

Closing in favor of #214 …

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jeremylt commented on issue openjournals/joss-reviews#8467.

I would be interested in reviewing, as long as me being out for travel for a couple of weeks in Jul and Aug isn’t a problem for the review timeline….

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grondo commented on issue flux-framework/flux-core#6774.

Also forgot to mention that this now has support for a module priority value. Module alternatives are sorted first by priority then by load order, so the last module configured gets preference if priorities are the same. The default priority is 100, and sched-simple has a configured priority of 50. …

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jameshcorbett commented on issue flux-framework/flux-coral2#373.

Looks like a transient error, it’s passing now! Setting MWP….

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vsoch open issue flannel-io/flannel#2254.

bug: br_netfilter requirement prevents startup - not required in user space container

This is similar to https://github.com/flannel-io/flannel/issues/2068, but a different environment….View Comment

jedbrown commented on issue Tehforsch/diman#91.

I just wanted to share this update from the const generics group lead:…

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adayton1 commented on issue LLNL/spheral#258.

> @adayton1 is this something you’re still working on / planning to work on in the near future? …

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JustinPrivitera open issue LLNL/conduit#1449.

Issue writing files on Windows

see https://github.com/visit-dav/visit/issues/20456…View Comment

cyrush commented on issue LLNL/conduit#1447.

:-) …

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markcmiller86 commented on issue LLNL/Silo#448.

FYI, if you have a chance, see #450….

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jeremylt commented on issue CEED/libCEED#1847.

Note to me - bump Ratel CI on Monday…

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cyrush commented on issue Alpine-DAV/ascent#1571.

This work builds off @nicolemarsaglia’s uniform grid sampling work to add sampling at a list of points, or via a line (start, end, and number of samples). …

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vsoch commented on issue zenodo/zenodo#1606.

You know, it’s been enough time this would be a fairly straight forward task for an LLM. As long as you provide it the structure and data you need to populate it….

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becker33 commented on issue spack/spack#50936.

@haampie added…

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jedbrown commented on issue rust-lang/rust#138689.

@wesleywiser :wave: What are the next steps for this PR?…

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vsoch open issue rootless-containers/usernetes#376.

Flannel doesn't see br_netfilter - expected?

Hi @AkihiroSuda. We are testing the latest (current master) of Usernetes, and flannel fails on deployment not seeing br_netfilter….View Comment

vsoch open issue kubernetes-sigs/node-feature-discovery#2185.

Question: how to expose all features?

Hi! I’m hoping this is a simple question to answer. How do I get NFD to expose all labels in Kubernetes? When I install out of the box, there are somewhere are 70 labels, however when you just export the raw features there are close to 10k. I’d like to get all 10K exported for my cluster. An I assume these are a set that were deemed important (but was this experimentally derived)? …View Comment

chu11 open issue flux-framework/flux-core#6896.

flux-job: attach_send_shell: Broken pipe

While writing tests for #5035, I repeatedly got a flux-job: attach_send_shell: Broken pipe error. It was regularly seen on the second of two `flux job attaches. For example:…View Comment

garlick commented on issue flux-framework/flux-core#6887.

I was mistaken. pthread_cancel() is only called on each broker module during broker shutdown, from modhash_destroy()

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cmoussa1 commented on issue flux-framework/flux-accounting#677.

Thanks for the review and the helpful feedback @jameshcorbett! I ended up changing this command’s name to just show-usage - I agree with you that it might be a better name for it than list-usage. I also force-pushed up some changes based on your suggestions above. Will set MWP here shortly…

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grondo commented on issue chaos/pdsh#170.

Well one thing you could do now is to put a wrapper script ssh into someplace like ~/bin/ssh with the following:…

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cmelone commented on issue spack/spack-packages#183.

@G-Ragghianti please rebase your PR on the latest version of spack-packages in order to get CI to pass…

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tgamblin closed issue spack/spack#50876.

`spack blame` fails to provide information on packages in the new spack-packages repo

### Steps to reproduce…View Comment

wihobbs commented on issue flux-framework/flux-core#6348.

@kulnaman also suggested this today, specifically for seeing the fluxion versions, which are currently only available through flux dmesg (which is restricted to the instance owner)….

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alecbcs commented on issue spack/spack#50931.

Todd and I considered this in #50868 and ultimately decided against it since setting a value would have no effect for users without rerunning spack repo update and thus would be confusing to debug. …

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garlick commented on issue flux-framework/flux-coral2#370.

> We should double check that we aren’t configuring the plugin under the old name anywhere so I’ll mark this WIP pending that. …

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adrienbernede commented on issue LLNL/radiuss-spack-configs#133.

Another nice side effect of anticipating the release is that RADIUSS Spack Configs will automatically pick that release in its CI. It wouldn

adayton1 commented on issue LLNL/Umpire#795.

> > What’s the current status of this merge request? I’m testing out asan and finding it works for simple tests. I’m working on enabling it in my application, but until this goes in, I’ll have to disable memory pools. …

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adrienbernede commented on issue LLNL/RAJA#1859.

@rhornung67 I

astrophpeter commented on issue openjournals/joss-reviews#8147.

Hi @fruzsinaagocs,…

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benzwick open issue NA-MIC/ProjectWeek#1519.

Project: Open Meshed Anatomy Viewer using Trame Slicer

### Draft Status…View Comment

adayton1 commented on issue LLNL/radiuss-spack-configs#133.

> > > > Where do the 2025.04.0 and 2025.06.0 version numbers come from? …

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astrophpeter commented on issue LLNL/SSAPy#88.

This PR Aims to address the JOSS review comment https://github.com/LLNL/SSAPy/issues/80…

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emily-howell closed issue Alpine-DAV/ascent#1560.

Replay Exception

I hit this exception if I do not delete my generated blueprint (.root) files from the previous run. …View Comment

jedbrown commented on issue rust-lang/rust#138689.

I rebased. The warnings for implied features were fixed by https://github.com/rust-lang/rust/pull/140920. I updated a stale comment left behind in that refactor, and my handling of features transitively implied by base features moved to rustc_codegen_ssa. …

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homeomorfismo commented on issue mfem/mfem#4769.

> I noticed that now the following two sample runs are actually identical: …

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v-dobrev commented on issue mfem/mfem#4903.

This PR is now under review (see the table in the PR description). To help with the review process, please do not force push to the branch….

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grondo commented on issue flux-framework/flux-core#6882.

Thanks! I’ll set MWP…

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v-dobrev commented on issue xsdk-project/xsdk-issues#277.

Hi @balay,…

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adrienbernede commented on issue spack/spack#50916.

For the records, here is a pre-v1 compiler compiler config that I am trying to port over to v1:…

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tgamblin commented on issue spack/spack#50920.

This one’s more complete – with updated docs…

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garlick commented on issue flux-framework/flux-core#6885.

I’ll set MWP - thanks!…

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chu11 commented on issue flux-framework/flux-core#6880.

just pushed a commit on top that implements --tail=N in flux job attach. Everything appears to work as expected. …

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cjekel commented on issue cjekel/similarity_measures#39.

Thank you!…

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JustinPrivitera commented on issue LLNL/conduit#1424.

With my two comments above I believe I have addressed all of your feedback @cyrush. I think this is ready to be merged. Please let me know if there is anything else we should discuss….

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trws commented on issue LLNL/camp#179.

They could if someone wants to set up an image with one of the CPU-backed SYCL implementations like AdaptiveCPP or the clang upstream offload version (which I think now has “run in separate process” support to give you memory errors on CPUs if you mess up transfers). We don’t have that set up though. …

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markcmiller86 commented on issue LLNL/Silo#432.

Already handled in f10090abcc63f5e93d52130db0b8bb0773c765d9…

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tgamblin commented on issue spack/spack-packages#44.

@kwryankrattiger …

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hppritcha commented on issue open-mpi/ompi#13279.

@edgargabriel i pushed the remainder of the fortran related files to the PR - hopefully….

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vsoch commented on issue kubernetes-sigs/node-feature-discovery#2170.

The nfd worker generates a lot of logs (and other unexpected output) so I wasn’t sure how to cleanly do that. Whereas with writing the file explicitly, I can control exactly the contents….

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trws commented on issue flux-framework/flux-sched#986.

Not substantively, we operate on the IDs as logical IDs (effectively assuming, in absence of actual structure, that lower IDs are close to other lower IDs). We still have a direct hwloc reader, which I believe is still tested, though we’re not currently using it. We would still need a way to connect the two together. Really what would likely be most useful in the short term would be to ensure that those logical IDs are translated back to physical IDs in exec or the shell. Having the actual locality in fluxion would definitely be good, but with what @ryanday36 showed in the issue description just doing that logical->physical translation even with hwloc-calc right before doing the env var assignment would fix it. Admittedly not fix it the long-term “right” way, but we’ll need that logical to physical translation anyway because we don’t want to be tied to whatever crazy variable numbering cuda or hip use from 1pm to 2pm on alternate Thursdays….

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grondo commented on issue flux-framework/flux-sched#986.

This issue came up again in the flux dev meeting yesterday, so just commenting here to revive the issue….

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mplegendre commented on issue flux-framework/flux-core#6883.

We’d previously discussed starting a spindle session at allocation time that lasts the whole allocation. That would also solve this problem. But the drawback is it’s hard for users to pass configuration arguments to spindle, since spindle’s session starts before the user gets control. Though I’ll go this route if we can’t do alternatives….

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cmoussa1 commented on issue flux-framework/flux-accounting#667.

Rebased this PR to catch up after #672. Setting MWP here…

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vsoch commented on issue expfactory-experiments/attention-network-test#2.

What sticks out to me is defining “blocks” that are then looped through for trials. So possible reduce the sections there, and within each entity added to blocks, you can also delete….

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balos1 commented on issue LLNL/sundials#721.

Thank you for opening this pull request. Due its size, it will take us awhile to be able to consider and review it. …

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alecbcs commented on issue LLNL/hubcast#19.

Oh good point! I think we can close this one out :)…

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cmelone commented on issue LLNL/hubcast#19.

@alecbcs is this still relevant given the addition of the config handler?…

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JustinPrivitera open issue Alpine-DAV/ascent#1563.

Original vs Actual Extents

Original mesh:…View Comment

JustinPrivitera open issue visit-dav/visit#20449.

VisIt crashes when rendering dataset using transparency

I am trying to visualize my x ray imaging setup, so I am making renders of two files, curv3d.silo and output.root. When I adjust opacity on my rays mesh and then click the viewer, VisIt crashes….View Comment

cmelone commented on issue spack/spack-packages#107.

If you’d like a review, try posting in the #pull-requests channel on Slack. The CI errors will need to be fixed though…

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alecbcs commented on issue spack/spack#50874.

Yep. Working on a few other things today / tomorrow. I can do this Friday….

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markcmiller86 commented on issue openjournals/joss-reviews#8106.

I recommend this paper for publication….

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adayton1 commented on issue kokkos/kokkos#8195.

Thank you! I’ll give Kokkos_IMPL_AMDGPU_FLAGS a try!…

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grondo commented on issue flux-framework/rfc#454.

Setting MWP….

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garlick open issue flux-framework/flux-accounting#671.

allow urgency weight to be reconfigurable

Problem: when the flux accounting priority plugin is in use, the urgency (described in RFC 30 has a very small impact on priority, which means that users cannot meaningfully lower the priority of their jobs (other than hold) relative to others, and sys admins cannot raise the priority of jobs….View Comment

artv3 commented on issue LLNL/RAJA#1853.

Consider moving the plugins into src/plugins – keep as cpp files. …

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jeremylt closed issue CEED/libCEED#1822.

GPU AtPoints Assembly

Following up from https://github.com/CEED/libCEED/pull/1799…View Comment

emily-howell commented on issue Alpine-DAV/ascent#1502.

## TLDR: …

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markcmiller86 commented on issue visit-dav/visit#20442.

> Here’s a question: the query output object for Spatial Extents queries is a single entry with key = ‘extents’, and value an array/vector of the values. With the changes to the output string, should the output object (XmlResult) be modified to use the XMin/XMax, etc keys instead of just ‘extents’? If so, this would possibly be more of a problem, even if it is the better way to report. …

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imguoguo commented on issue osbuild/bootc-image-builder#963.

> Thank you! This looks nice! Ideally we would have a proper test for this but given that its not an official fedora arch yet it fine. …

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jandrej commented on issue mfem/mfem#4898.

> @jandrej, could I suggest a couple small changes that I noticed in the DFEM code? …

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tzanio commented on issue mfem/mfem#4898.

This PR is now under review (see the table in the PR description). To help with the review process, please do not force push to the branch….

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vsoch commented on issue kubernetes/website#51164.

@graz-dev do you need any more clarification from us? …

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samuelkgutierrez commented on issue hpc/quo-vadis#342.

Is something up with Github?…

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adayton1 commented on issue LLNL/Umpire#967.

I think you are going to need to update the MemoryResourceType enum in MemoryResourceTypes.hpp. Otherwise, “SHARED” could map to the wrong implementation….

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JustinPrivitera commented on issue LLNL/Silo#448.

This would be a nice feature!…

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balos1 commented on issue spack/spack-packages#219.

@everythingfunctional Can you try adding depends_on("blas", when="+lapack") to the sundials package.py to see if that fixes this. …

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trws commented on issue flux-framework/flux-core#6492.

I don’t recall seeing this when it was being done, but it was mentioned in one of our recent meetings so I came looking. There are at least some updates here, in that uv_ref/unref now exist at least, and the child handling could be handled one of a couple of ways depending on the requirements (either uv_process_t if we can, or uv_signal_t if not). The others I think are still at least different, and the close item is vaguely interesting, I would think we’d be able to tolerate that even though it is a bit annoying. It’s probably safer for io_uring style setups as well as windows, but I’m not 100% sure about that….

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gardner48 commented on issue LLNL/sundials#713.

Fixing this typo in another PR….

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adrienbernede commented on issue LLNL/radiuss-spack-configs#129.

@tdrwenski Could you open a PR in Quandary that checks whether your CI works well with the present PR in RSC?…

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camierjs commented on issue mfem/mfem#4326.

There were some changes to bring from doftrans-three-arg, done in 2bef31b and 4a46614. …

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grondo commented on issue flux-framework/flux-core#6873.

> I wonder if we could add an exec_bypass flag and let this plugin use both flags and post alloc (adding a fake or empty R), free, start, and finish (with job result) and have the proxy job track the state of the actual job? …

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garlick commented on issue flux-framework/flux-core#6873.

This is pretty neat. However it seems like its usefulness will be limited as long as the result of the proxy job is always reported as failure. I see why a fatal exception was used to get the job from DEPEND to CLEANUP state in the prototype, since there’s no other way to do that currently, but I wonder if we can think up a better way that allows the proxy job result to reflect the result of the actual job. That way workflow tools, not to mention Flux native dependency schemes like afterok ,would not need to treat delegated jobs specially when they need to fetch the job result. …

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BradWhitlock open issue LLNL/conduit#1444.

Partitioner fails when multiple topologies provide adjsets.

I wrote a new test case to test adjset spatial sorting, which makes a mesh and generates lines and corners for it and validates the adjsets. Later, I decided to hook up partitioning. I made the partitioned mesh after the other meshes. It caused the partitioner to crash because topologies (other than the one being partitioned) had adjsets already defined. The logic loops over all adjsets in the domain, which is not right….View Comment

vsoch commented on issue vsoch/oci-python#24.

Thanks! …

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markcmiller86 commented on issue visit-dav/visit#4914.

Here is a potential confusion. When listing the dimensions of an multi-dimensional mesh (e.g. 2DCoRectMesh as above), the dimensions are specified as ZYX, not XYZ. So, the mesh is 9 nodes in Y and 33 nodes in X….

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JustinPrivitera commented on issue visit-dav/visit#20440.

> > One question - does it make sense to rename bv_qt6.sh to bv_qt.sh, and to change the name in associated build scripts and in modules.xml? …

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jedbrown commented on issue rsmpi/rsmpi#215.

This would be resolved by #214 . There has also been an issue with the runtime feature (cf. #203 ). Do you have an opinion about this question? https://github.com/rsmpi/rsmpi/pull/214#discussion_r2136959267…

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jedbrown commented on issue openjournals/joss-reviews#7881.

@editorialbot recommend-accept…

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tzanio commented on issue mfem/mfem#4841.

@dylan-copeland , can you please resolve conflicts?…

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