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Open Source Heartbeat

markcmiller86 open issue LLNL/Silo#479.

Memory leak in PDB Silo driver

I found this memory leak in the Silo PDB driver with valgrind and VisIt….View Comment

tgamblin commented on issue spack/spack#51165.

I think this is subsumed by #51162, but let me know if there is something here that is not covered there….

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jedbrown commented on issue openjournals/joss-reviews#9333.

Hi @lindsayad @mprobson

tzanio commented on issue mfem/mfem#5023.

> I also saw that an ex41 is already in-review (#4289); please let me know if I should update this to be ex42. …

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grondo commented on issue flux-framework/flux-core#7182.

I’ve force pushed a new version of this PR that fixes up the core/gpu assignments in the shell proper, so that flux_shell_rank_info_unpack(3) reflects the update core and gpu sets. This allows mpibind to just work: …

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tzanio commented on issue visit-dav/visit#19046.

@cyrush – I am happy to elaborate further on this if it will be useful…

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cyrush commented on issue visit-dav/visit#19046.

Yes this does help - thanks for this explanation. …

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cyrush commented on issue spack/spack-packages#2222.

The concretizer can be unpredictable, frustrating aspect of all of this …

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imguoguo commented on issue radxa-pkg/radxa-firmware#29.

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imguoguo commented on issue radxa-pkg/qualcomm-profiles#15.

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hppritcha commented on issue open-mpi/ompi#13280.

all good ideas. i’ll work on these next week….

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tomstitt commented on issue mfem/mfem#4333.

> @tomstitt, is this backward compatible, and if not, should we check for the Caliper version? …

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v-dobrev commented on issue mfem/mfem#4993.

Re-merged in next for testing……

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cjvogl commented on issue mfem/mfem#4496.

> I’m happy to see this through @cjvogl. Do I have your permission to commit and push to your branch? :) …

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dylan-copeland commented on issue mfem/mfem#5087.

Thank you @chunyu79 for the update, and congratulations on finding a solution! I was able to run your test and reproduce the issue, but did not have time yet to investigate deeply. This was labeled as an AMR issue, but it seems more closely related to contact problems with constraints to couple boundaries of different domains. There has been recent work on this topic in PR 4996, and @psocratis may have some advice….

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jeremylt commented on issue freeCodeCamp/contribute#1008.

Those linked PRs are from staff. Staff are not external contributors….

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wihobbs open issue flux-framework/flux-sched#1415.

provide a reason a job was unsatisfiable

A job can fail on CORAL-2 systems because it requests ‘too many’ gpus (too many is italicized because the job might also request CPX or other modes that create more gpus.) A job can also fail for the standard reason that more nodes were requested than are available in the cluster. …View Comment

garlick commented on issue chaos/diod#158.

Oh this changed the github workflow so might need a manual merge. I’ll press the button….

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adrienbernede commented on issue LLNL/RAJA#1934.

(cancelled the CI pipeline to restart and force Matrix to run with variable)…

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adayton1 commented on issue LLNL/CARE#351.

@adrienbernede thank you!…

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adrienbernede commented on issue LLNL/CARE#351.

@adayton1 This is ready ;)…

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markcmiller86 commented on issue visit-dav/visit#20682.

Wow…great catch @biagas! No idea that logic existed….

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becker33 commented on issue spack/spack#51490.

Looking at the optimization criteria for variant_default_not_used and variant_not_default, it looks like we might have to swap the ordering some in addition to removing the one for variant_not_default for already built packages….

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alecbcs commented on issue spack/spack#51433.

Trying this PR I ran into a couple of errors on edge cases. Happy to help work on fixing these if needed. …

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gardner48 commented on issue mfem/mfem#5073.

> Should the calls be added to the examples? …

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jandrej commented on issue mfem/mfem#5073.

Should the calls be added to the examples?…

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bgunnar5 commented on issue LLNL/merlin#587.

@lucpeterson I think they are but then again I’m biased cause I wrote them…

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adayton1 closed issue LLNL/RAJA#1618.

Support assignment operator for layouts (and views)

RAJA/util/TypedViewBase.hpp:481:23: …View Comment

JustinPrivitera commented on issue visit-dav/visit#20666.

@IdoAkkerman please see continued discussion in #19046…

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wihobbs commented on issue flux-framework/flux-core#7153.

For reference, here’s how mpibind prints affinity in verbose mode:…

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cmoussa1 commented on issue flux-framework/flux-accounting#778.

Thanks @jameshcorbett!…

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tpatki commented on issue flux-framework/PerfFlowAspect#191.

Closing with PR #199 and #200 …

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tpatki commented on issue LLNL/variorum#590.

@slabasan and I are in the process of testing ESMI+HSMP to obtain CCD-only (CPU) power on the APU. …

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cmelone open issue LLNL/hubcast#180.

Hubcast for Spack CI

I went through the Spack CI Github-Gitlab sync script to see what features might be good to include in Hubcast, and which would be better served as plugins….View Comment

artv3 closed issue LLNL/RAJA#1664.

Improving RAJA integration with perf tools

PR: https://github.com/LLNL/RAJA/pull/1662 propagates the kernel naming API to all back-ends. For CUDA and HIP it is well defined as we can use the ROCTX and NVTX tools to name our kernels. We currently don’t have tool support for the other back-ends. An area of future investigation is how we can better integrate with tools and provide kernel naming when running on other backends. …View Comment

emily-howell closed issue Alpine-DAV/ascent#1515.

visit camera mode helper

We should explore a unified helper to accept visit style camera and convert it to a ascent camera. …View Comment

trws commented on issue ACCBDD/reclamation-dev#276.

Not to say it’s “good” but a create deployer with buckets of water will fill the cauldron. Still trying to work out if I can automate this thing the rest of the way, but it’s something….

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JustinPrivitera commented on issue LLNL/conduit#1471.

put this in the blueprint spec docs…

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mplegendre commented on issue LLNL/Spindle#43.

Closing since Nick is putting together updated containers….

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vladotomov commented on issue CEED/Laghos#199.

Should I merge it or do you plan more additions?…

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chu11 open issue flux-framework/flux-core#7173.

libkvs: function to asynchronously lookup all blobrefs in a kvs treeobj

Per discussion in https://github.com/flux-framework/flux-core/pull/7158 and https://github.com/flux-framework/flux-core/pull/6828, it’d be convenient if there was a function to handle parallel lookups of all blobrefs in a valref treeobj. This could be used in flux-dump and flux-fsck as they both do these parallelized lookups already….View Comment

balos1 commented on issue LLNL/sundials#789.

What compiler and version are you using? Can you attach your CMakeCache.txt file?…

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gardner48 commented on issue LLNL/sundials#787.

@drreynolds I’ve updated the correction modification to address the roundoff issues and resolved the open comments. However, this PR also includes updates from #788 (makes adding logging to the constraint checks easier), so hold off on taking another pass over this PR until that one is merged….

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jameshcorbett commented on issue LLNL/scr#604.

I fixed this up so all the actions pass, I think this is ready to go in. Will check in next team meeting. Actions are now passing: https://github.com/jameshcorbett/scr/actions/runs/18811341893…

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hppritcha commented on issue open-mpi/ompi#9837.

this PR can be closed. we moved well beyond this as part of the big count work. and there’s more to come sometime later after the ‘c’ ABI stuff is complete and we want to venture into a fortran ABI world….

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camierjs commented on issue mfem/mfem#3658.

> mpirun -np 4 pmesh-optimizer -m kershaw_6x6x6.mesh -o p -rs rl -mid 321 -tid 5 -ls 3 -nor -rtol 1e-8 -vl 1 -lc 0.5 -pa

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v-dobrev commented on issue mfem/mfem#5085.

Some thoughts: some of the methods in ARKStepODE will be common with other similar classes. How do you envision avoiding repeated definitions? Also, when you inherit from both TimeDependentOperator and ARKStepODE, you get Mult from both and you have Width/Height (from the former) and Size from the latter which is not ideal. …

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garlick commented on issue chaos/diod#147.

I’ve got it, thanks!…

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grondo commented on issue chaos/diod#147.

Yeah, want me to press the button?…

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gardner48 commented on issue LLNL/sundials#788.

The main logging updates are in tools/suntools/logs.py. The changes to the source files and outputs are to update logging region labels to the new convention of <begin|end>-<region-name>[-list] (mostly adding -list where needed)….

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markcmiller86 commented on issue LLNL/Silo#477.

Am recording here a smoking gun reproducer of the issue in error stack error messages. Attached is an intentionally corrupted HDF5 file. 1.14.4 produces an error message indicating a checksum failure. 1.14.6 does not. …

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tgamblin commented on issue spack/spack#51461.

Per discussion in Slack, @alalazo’s going to make a PR that fixes the docs and does this: …

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tzanio commented on issue mfem/mfem#5086.

Merged in next for testing……

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artv3 commented on issue mfem/mfem#5082.

This is great! I’ll give it a spin these next few days. The one suggestion I have is lets add a constructor that enables us to specify the device memory type — I just pushed something up for quadrature function here: https://github.com/mfem/mfem/pull/5086 …

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vladotomov commented on issue mfem/mfem#3658.

@camierjs …

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jandrej commented on issue mfem/mfem#5022.

> Are there some GPU Tests enabled ? …

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cjvogl commented on issue mfem/mfem#4977.

This is now out of scope for this PR (given what was discussed at the technical meeting today), but if anyone is interested in future work into how refactoring TimeDependentOperator into modular interfaces might look (as @bslazarov had suggested at one point), I’ve started a WIP PR that showcases how an ARKStepSolver-specific interface could work: https://github.com/mfem/mfem/pull/5085…

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chakshinglee commented on issue liruipeng/ml2#37.

The PR looks good to me too. I only have a design question around the Chebyshev frequencies (see above). Another thing, which is beyond the scope of this PR, is that how do you guys think about using config files instead of relying on command line options to pass in values of various parameters?…

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grondo commented on issue flux-framework/flux-core#7168.

Well, I don’t actually see anything in RFC 44 that says an undrain event can only be posted for ranks that were previously drained, so one idea would be to add a new “mode” to the undrain RPC like “update” which simply posts an extra undrain event to the eventlog with the new reason. A tool would then have to process the entire resource eventlog to be sure the most updated undrain reason event for any given rank has been processed (instead of assuming the first undrain event after the corresponding drain event has the correct reason)….

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chu11 commented on issue flux-framework/flux-core#7158.

re-pushed, removing the “common function” discussed above. Fixed up a few commit messages I noticed still said --async

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imguoguo commented on issue RadxaOS-SDK/rsdk#112.

>

adayton1 commented on issue LLNL/blt#737.

Could you do CUDA builds on another toss 4 machine? There would just be no testing the executables. But testing the build is better than nothing….

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jeremylt commented on issue CEED/libCEED#1901.

Yup, that should be the fix - use the blocking as if we actually cared about the basis for the operation…

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JustinPrivitera commented on issue visit-dav/visit#20576.

TODO…

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imguoguo commented on issue radxa-pkg/qualcomm-profiles#10.

https://applink.feishu.cn/client/message/link/open?token=AmfHwOsK4gAEaPnma7hoQAQ%3D…

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tomstitt commented on issue mfem/mfem#5027.

I see that ipiv_base is used in some places but not all, does it make sense switch everywhere to use it? or remove it?…

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garlick commented on issue flux-framework/flux-core#7158.

> So, we need to store all the lookup error indexes and errnos on a list somewhere for later retrieval. But that just seemed like a lot of effort for the amount of gain. (thus my eventual “err_cb” mechanism instead) …

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cmoussa1 commented on issue flux-framework/flux-accounting#775.

Actually, I think I might have just discovered it

JustinPrivitera open issue LLNL/conduit#1470.

`to_silo` supports a non-idiomatic volume fraction presentation case. Should we remove it?

to_silo supports this non-idiomatic case that does not conform to the Blueprint:…View Comment

cyrush open issue Alpine-DAV/ascent#1625.

add revolve filter

RZ to 3D…View Comment

JustinPrivitera commented on issue Alpine-DAV/ascent#1620.

``` …

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cyrush commented on issue visit-dav/visit#20636.

First pop up:…

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garlick commented on issue flux-framework/flux-foundry#21.

Oh right, no mergify. Pressing the button….

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wihobbs commented on issue flux-framework/flux-core#7165.

> You didn’t provide any argument for using a long_help variable or against a docstring, though, so perhaps I’m missing something obvious. …

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jbschroder commented on issue XBraid/xbraid#96.

Hi,…

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BradWhitlock closed issue LLNL/axom#1058.

Migrate shared memory capability to Umpire

We’re currently using MPI3 shared memory in some quest use-cases. …View Comment

trws open issue flux-framework/flux-sched#1414.

Tracking issue for shrinking JGF

After a discussion between @milroy, @jameshcorbett and I today this is the running plan for how we’re going to shrink JGF and get rabbit scheduling working with JGF on larger systems….View Comment

balos1 closed issue LLNL/sundials#770.

How to Keep Certain Solution Components Fixed in KINSOL?

For finite element simulations, it’s common to solve nonlinear systems involving multiple blocks in a staggered fashion….View Comment

adayton1 commented on issue LLNL/camp#190.

I’m looking at the definition for unordered_map and unordered_multimap, and as far as I can tell they only require the equality operator….

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adayton1 commented on issue LLNL/RAJA#1923.

@rhornung67, is this still a WIP or is it ready for review?…

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vsoch commented on issue flux-framework/flux-coral2#411.

This does not require review yet. Updates for this PR include: …

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tzanio commented on issue mfem/mfem#5072.

This PR is now under review (see the table in the PR description). To help with the review process, please do not force push to the branch….

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chu11 commented on issue flux-framework/flux-core#7158.

re-pushed, converting –async to –fast….

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cjekel commented on issue cjekel/similarity_measures#40.

LGTM! Thank you! Sorry this took so long to get in….

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trws commented on issue LLNL/camp#190.

As it sits I’m ok with this, but I expected based on the description that there would be a specialization of std::hash in here so that unordered_map and similar could hold them. Is that not part of what you wanted to accomplish?…

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JustinPrivitera commented on issue visit-dav/visit#17791.

3.5.0 deliverables have been completed so I am leaving the milestone at 4.0….

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tgamblin commented on issue spack/spack#51137.

> Finally, just a comment on colors (disregard this if you don’t agree). I wouldn’t use red for run dependencies, cause red is usually associated with failures. Maybe yellow? …

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imguoguo commented on issue radxa-pkg/qualcomm-profiles#7.

>

v-dobrev commented on issue mfem/mfem#4431.

@tzanio, I just pushed a small update to increase the timeout on Matrix – please re-merge it in next when you get a chance….

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artv3 commented on issue mfem/mfem#2176.

I think we can close this PR, its from a long time ago… …

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jameshcorbett commented on issue flux-framework/flux-sched#1403.

Hi @kostiscpp sorry I forgot to answer this. Are you still interested in a solution? As @grondo mentioned, Fluxion needs to be configured so that it knows about the topology of each node, and specifically about the placement of sockets. How are you starting your Flux instance at the moment?…

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wihobbs open issue flux-framework/flux-core#7154.

cli plugins: allow documentation to be embedded in plugins

Problem: CLI plugins will often need more extensive documentation than what can be placed in the argparse help string. Currently, there is no standardized way to supply this documentation, which may cause many different implementations, making it difficult for users to find the docs….View Comment

grondo commented on issue flux-framework/flux-core#7158.

Just for my own curiosity, when would we not want the “fast” behavior? …

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garlick commented on issue flux-framework/flux-core#7157.

Dropcache drops “clean” blobs from the cache but that doesn’t mean other things (KVS, metadata) aren’t still referencing those blobs….

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markcmiller86 open issue LLNL/Silo#468.

Incorporate ZFP patches when OMP is active

```…View Comment

hppritcha commented on issue open-mpi/ompi#13436.

closing this and opening a new one with different selection of shas…

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hppritcha commented on issue mpi-forum/mpi-forum.github.io#27.

@wesbland updating sessions wg leads…

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JustinPrivitera commented on issue mfem/mfem#4307.

@cyrush can we let this be automatically closed since you have solved this in VisIt? Or do we still need this?…

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jandrej commented on issue mfem/mfem#4485.

ping @nnpp-schneier @victor-decaria-nnl …

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adrienbernede commented on issue mfem/mfem#4431.

@v-dobrev thank you for updating this PR. Glad to see you leverage latest support for matrix added very recently. …

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