Open Source Heartbeat: Open Source Heartbeat

Open Source Heartbeat

tzanio commented on issue mfem/mfem#5230.

This PR is now under review (see the table in the PR description). To help with the review process, please do not force push to the branch….

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cyrush commented on issue visit-dav/visit#20944.

Thanks for sharing, this pretty crazy that the compiler / system headers may be incompatible with the system standard libs. …

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alecbcs commented on issue spack/spack-packages#4545.

@spackbot run pipeline…

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tgamblin commented on issue spack/spack#52205.

I also like deprecated() over deprecated=True, for the cases above. How, though, would you handle the mappings in #52112? I suppose you could still have an optional replaecment:…

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hppritcha commented on issue open-mpi/ompi#12458.

Should we keep this PR open?…

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v-dobrev commented on issue mfem/mfem#5306.

Re-merged in next for testing……

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cyrush commented on issue llnl/conduit#1594.

@Arlie-Capps let me know if these fixes resolve the fmt issues you encountered…

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BradWhitlock open issue llnl/axom#1693.

Add support for uniform grid sampling in sampling shaper

The query points in our sampling-based workflow are currently defined by Gauss-Legendre quadrature node locations within each cell….View Comment

chu11 open issue flux-framework/rfc#517.

rfc23: add year suffix?

In https://github.com/flux-framework/flux-core/issues/6132, there is a configuration being developed for preserving history of drain/undrain events….View Comment

grondo closed issue flux-framework/flux-sched#1469.

loading `sched-fluxion-resource` with `load-format=hwloc` causes interner abort

I’m not even sure if this is supported, but I’m trying to use match-policy=locality on a single node and wanted to see if loading the hwloc XML topology would work, but ran into this issue immediately:…View Comment

trws commented on issue flux-framework/flux-sched#1449.

Same, that’s the normal way we do it in testing and everywhere else. All I can think is maybe we have a race between the hello protocol and the free event for the job. I’m trying to work out how to test it reliably, but it’s a tricky thing to pin down….

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grondo commented on issue flux-framework/flux-core#7589.

Well, the obvious thing to do is to add a configuration flag to the job-list module that puts it in private mode, effectively adding and user:<requestor> to the constraints used to generate responses. Do you know if private-mode should also secure job-list.job-stats so guest users can’t see the general job stats? (shows counts of all jobs in all states) My guess is yes….

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garlick commented on issue flux-framework/flux-core#7500.

As I’m working through a subclassing experiment I’m realizing this doesn’t quite solve the problem. I’ll close this PR for now and open some more once the design is solid….

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trws commented on issue flux-framework/flux-coral2#473.

Ok, we could move it to a resolved state on the board or similar I guess. …

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cmoussa1 commented on issue flux-framework/flux-accounting#863.

Looks good to me! Thanks bot…

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adrienbernede open issue llnl/radiuss-shared-ci#75.

Manually triggering a flux job alone results in using the default queue instead of CI specific one.

Current workaround: manually trigger the shared alloc job first and on completion trigger the desired job….View Comment

JustinPrivitera commented on issue llnl/conduit#1111.

#1593…

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markcmiller86 commented on issue llnl/Silo#535.

> Do you have a rough guess on when there will be a tagged release that incorporates this fix?…

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artv3 commented on issue llnl/RAJA#2021.

> > > I am concerned that people will use this without knowing that its doing expensive div/mod calculations and see that it performs more poorly than a native cuda/hip 2d or 3d kernel. Would it make sense to have policies that allow mapping to 2d or 3d kernels. …

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tomstitt commented on issue llnl/RAJA#2021.

> > I am concerned that people will use this without knowing that its doing expensive div/mod calculations and see that it performs more poorly than a native cuda/hip 2d or 3d kernel. Would it make sense to have policies that allow mapping to 2d or 3d kernels….

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imguoguo commented on issue imguoguo/picoclaw_docs#1.

/fix

wihobbs open issue flux-framework/rfc#516.

version number is screwed up in webpage names

Somewhere along the way, 0.13.0 got baked into our metadata: …View Comment

garlick commented on issue flux-framework/flux-sched#1449.

> Could there be a race condition though that something isn’t ready yet for the next module to be loaded?…

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wihobbs commented on issue flux-framework/flux-sched#1468.

I think I meant to say jgf_shorthand. jgf needs to be documented too……

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milroy commented on issue flux-framework/flux-sched#1465.

I mistakenly created a branch on flux-sched rather than my fork. I’m deleting this PR and will open one with the changes made against my fork of flux-sched….

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wihobbs commented on issue flux-framework/flux-core#7252.

>I guess you get the honor of fixing one last merge conflict in t/Makefile.am …

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chu11 commented on issue flux-framework/flux-core#7590.

hmmm but…

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jameshcorbett commented on issue flux-framework/flux-coral2#473.

I’m not sure we should close this, but maybe we should remove it from the sprint or somehow mark it as low priority. If users/admins ever start using lots of space in persistent storages, this issue would bite us again, and we’d want a way to update the vertex sizes dynamically….

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benzwick closed issue SlicerCBM/Guix-SlicerCBM#1.

First verified end-to-end build of slicer-cbm

The package has never been built end-to-end. The current slicer-cbm.scm was written from first principles against the make-slicer-scripted-module-5.10 pattern in guix-systole, its sha256 was resolved via guix download --git, and it passes guix lint

jeremylt commented on issue CEED/libCEED#1951.

Style fix requested by CI: …

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JustinPrivitera commented on issue visit-dav/visit#20943.

From @markcmiller86 …

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becker33 commented on issue spack/spack-packages#2165.

In the long run we need to make this file properly versioned in its own repo, but I don’t think that’s a change to enforce on this PR….

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jameshcorbett commented on issue flux-framework/flux-sched#1449.

This happened again on elcap. Coincidentally (?) it was also a 64-node job. I once again could not find anything related to the job ID in f58 or decimal encodings in journalctl, and the eventlog for the job (and also for the previous job this happened to) looked normal and sensible. …

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gardner48 commented on issue erf-model/ERF#3138.

#3134 changed query to get because one input file had a typo in the prefix (tert.prob_name instead of erf.prob_name) and others files were missing the problem name both of which led to unexpected results. Throwing an error would have helped catch this sooner. It also looks like an unknown problem name could cause similar issues but catching that would require validating the input problem name. …

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JustinPrivitera open issue Alpine-DAV/ascent#1714.

macro mispelling issue for CUDA

https://github.com/Alpine-DAV/ascent/blob/959049031014123fec89f0c4eda9b01a5e519f3d/src/libs/ascent/runtimes/expressions/ascent_execution_policies.hpp#L157…View Comment

gardner48 open issue llnl/sundials#924.

SPRK partition of variables

Hello,…View Comment

artv3 commented on issue llnl/RAJAPerf#656.

To compare compiler performance consider putting together a ratio plot between a base compiler …

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jandrej commented on issue mfem/mfem#5272.

Thank you! I was just checking in, no rush….

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markcmiller86 commented on issue mfem/mfem#5318.

Is the phrase “PR authors” intended to imply human-in-the-loop (human gatekeeper)? If so maybe “human PR authors” would make that a little clearer….

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adayton1 commented on issue llnl/axom#1846.

> I think we may not want to use that flag as it is “experimental”. That is, if we can remove the host/device qualifiers on constexpr methods altogether. The compilers should be smart enough to do the right things for those….

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cyrush open issue Alpine-DAV/ascent#1712.

ascent png encoding fails with large images

testing tiled rendering with 16192x16192 output image…View Comment

jedbrown commented on issue CSStipendRankings/CSStipendRankings#89.

Not sure what Claude has to do with this. I hope it isn’t being treated as an epistemic authority on which universities charge a fee. As documented previously, the size of the fee can vary widely (though my institution isn’t as shamefully bad as it once was). Anyway, thanks for adding the tag….

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jedbrown commented on issue openjournals/joss-reviews#7716.

Hi @abaer-kit, I see that some of the issues on your repository that were opened via this review are still open. Could you determine if they are complete and close if so? And let us know if there is anything you understand remains to be addressed?…

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btalamini commented on issue llnl/smith#1585.

@white238 and @tupek2 , I modified this. Would you review again? …

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BradWhitlock open issue llnl/axom#1628.

Improve tranformation support for Klee's Geometry operators

Klee shapes have operators that apply transformations (scale, translate, rotate, …) to their geometry….View Comment

markcmiller86 commented on issue llnl/Silo#543.

FYI…in #548, I did fix the issue on main your experience alerted me to and I mentioned above….

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grondo commented on issue flux-framework/flux-core#7550.

This could be solved by the mapper introduced in #7566, since it is able to set or adjust arbitrary systemd properties per job, and has access to the locally assigned resources. As a first cut, the default HwlocMapper could scale MemoryMax by the ratio of cores allocated to the job vs available cores, e.g. if MemoryMax=98% in the config, and a job is assigned half the cores, the mapper could return MemoryMax=49%. …

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garlick commented on issue flux-framework/flux-core#7568.

Ok, on reflection, your instincts are I think correct. I’ll move the “normalization”, the standard device list, etc (basically what systemd does) over to flux-security and leave the helper with a simpler job: fetch properties, set options….

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cbritopacheco commented on issue cbritopacheco/rodin#244.

@copilot …

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jeremylt commented on issue CEED/libCEED#1951.

This is looking pretty good. Did you want to take a try at adding this to the CUDA ref backend?…

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cyrush open issue visit-dav/visit#20935.

feedback for new mfem LOR support

From Veselin:…View Comment

markcmiller86 commented on issue visit-dav/visit#20934.

Just curious if this general section on File Locations might address some of the concern and whether this specific secrtion on debug logs address specific questions about that….

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alecbcs commented on issue spack/spack-packages#4373.

Hi all, this PR should now be ready for a final review and merge. The secrets have been created in the repository and AWS has been configured for OIDC authentication with GitHub….

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v-dobrev commented on issue mfem/mfem#5312.

This PR is now under review (see the table in the PR description). To help with the review process, please do not force push to the branch….

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dylan-copeland commented on issue mfem/mfem#5313.

As @v-dobrev mentioned, mesh-explorer has features to help refine (uniformly) and convert the mesh. If you would like more control over refinement, Mesh::KnotInsert gives you complete control over the number of elements and their spacing, for each KnotVector. If you would like to use lower than 4th-order, it would be best to refine the mesh fully with order 4 and then convert to lower order (e.g. mesh-explorer option ‘c’)….

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adrienbernede commented on issue llnl/radiuss-spack-configs#165.

@tdrwenski to “fix” that failing job, first trigger the Dane alloc job, then the Dane spack job and then the reindex job – possibly several times – until it passes…

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alecbcs commented on issue llnl/hubcast-test#4.

@lc-hubcast approve…

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cyrush open issue llnl/conduit#1585.

conduit util to coalesce related vf fields into a matset and matset values

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JustinPrivitera commented on issue llnl/conduit#1585.

This will be helpful for Ascent integration work Nicole is working on….

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vsoch commented on issue kubeflow/trainer#3312.

Thanks for the ping @andreyvelich ! …

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garlick commented on issue flux-framework/flux-sched#1461.

“Very useful or at least harmless” falls short of the justification needed to bypass our normal test/soak cycles IMO. It should be “Fixes a critical problem observed in production”. …

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wihobbs commented on issue flux-framework/flux-core#7537.

Any amount of sharness testing under ASAN is better than none at all; thanks for pushing on this @chu11!…

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chu11 commented on issue flux-framework/flux-core#7537.

> Perhaps one consideration is that under ASAN, we just run some subset of sharness tests. At some point, we perhaps accept that some tests are just weird and kooky enough that it’s unrealistic we can get everything working under ASAN without heroic efforts or obscene workarounds….

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cmoussa1 open issue flux-framework/flux-accounting#858.

job usage: redesign job usage decay to make it more configurable post-DB deployment

I had an offline conversation with @ryanday36 about the possibility of redesigning how job usage is decayed in flux-accounting to make it more configurable post-deployment….View Comment

vsoch commented on issue singularityhub/singularity.lang#12.

That’s alright! Have you tested and confirmed this works as you would like?…

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trws commented on issue flux-framework/flux-sched#1454.

Are the tests added in t: add tests for storage_node in request_feasible still relevant?…

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garlick commented on issue flux-framework/flux-coral2#478.

> One additional concern is the added load these daemons will place on the k8s infrastructure when they’re always running….

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trws commented on issue flux-framework/flux-coral2#478.

So after tuning it’s 15 seconds of CPU time per day on the segregated system cores? Did anyone look at whether there was measurable impact on a workload, even without doing further containment that’s not much at all….

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vsoch open issue converged-computing/slurm-operator#9.

Improvements to do

- [ ] remove JobSet. It isn

benzwick open issue SlicerCBM/SlicerCBM#78.

Package SlicerCBM for GNU Guix (ship guix.scm + guix-systole channel entry)

The following was written by Claude Code……View Comment

benzwick open issue SlicerCBM/Guix-SlicerCBM#6.

Optional: slicer-cbm-app curated launcher via make-slicer-application

guix-systole provides a make-slicer-application factory that wraps a curated module set behind a single branded launcher. Launching the wrapper overrides SLICER_ADDITIONAL_MODULE_PATHS to only the chosen modules, so the resulting Slicer instance shows only CBM-relevant modules rather than everything in the profile….View Comment

sam-maloney commented on issue flux-framework/flux-sched#1457.

> Oh, I should have asked, I think we gave you enough access to be able to set merge-when-passing for yourself on this PR now that you have an approving review. If something doesn’t work with that, poke me and I’ll set it and see what’s going on with the permissions. …

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trws commented on issue flux-framework/flux-core#7520.

Sounds like a good plan to me, especially since different vendors and cases may need to allow for differences….

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becker33 commented on issue spack/spack#51946.

@wouterdegeus you need to make changes to address the feedback from Harmen and myself above….

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tgamblin commented on issue spack/spack#52291.

Blocked is better. Still not sure whether it

hppritcha commented on issue open-mpi/ompi#12200.

anyone still working on this PR @jiaxiyan …

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cyrush open issue Alpine-DAV/ascent#1710.

field filtering matset considerations

Support something along the lines of:…View Comment

emily-howell commented on issue Alpine-DAV/ascent#1701.

Thanks for adding the checkboxes @cyrush. That helped me realize that I had missed a line item in the issue….

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milroy commented on issue flux-framework/flux-sched#1414.

Claude and I generated a prototype in Python for structural compression to address item 4 above. I’m pasting it here for discussion: https://gist.github.com/milroy/069f042e14f2fa21b6aab0f977b1453e…

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benzwick commented on issue benzwick/StreamVorti#46.

## UMFPack vs MUMPS at np=1: why MATLAB’s factorize() matters…

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tgamblin commented on issue spack/spack#52319.

@green-br does this look ok?…

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tzanio open issue mfem/mfem#5310.

LOR does not support MatrixCoefficient

When using LOR batched assembly, forms with MatrixCoefficient are not properly supported. The issue stems from the ProjectLORCoefficient function located in fem/lor/lor_batched.hpp….View Comment

markcmiller86 commented on issue llnl/Silo#543.

@junghans I believe this is corrected on the HEAD of the 4.12RC branch. …

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grondo commented on issue flux-framework/rfc#515.

Fixed those things and will set MWP….

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jameshcorbett commented on issue flux-framework/flux-sched#1454.

I rebased on top of #1453 because otherwise the tests in https://github.com/flux-framework/flux-sched/pull/1454/commits/1a3244f70c95fd3d018ebca1c305145ee0685dbf failed when reloading a module with new resource types. However, the tests I added in that commit pass even without the changes introduced by https://github.com/flux-framework/flux-sched/pull/1454/commits/b22642f8c17cc5b100cd115565430476bf685af5. …

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garlick commented on issue flux-framework/flux-core#7546.

Sounds reasonable! Yeah we should move forward with this….

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vsoch open issue converged-computing/mcp-server#13.

Support for catalog

Conceptually, we have the idea of a catalog, and we are using it to expose resource providers (both compute and related resources, and software) for real and simulated. We also support adding one off functions and events. I’d like to expose the ability to add a catalog, where the catalog is akin to the resource provider interface. We don’t care about how it works or what it does - it just needs to generate the instructions for how to make the different calls. The current resource providers will fall into it nicely, and I have ideas for other (more workflow related) catalogs I would like to add….View Comment

markcmiller86 commented on issue visit-dav/visit#20924.

I know it

trws commented on issue flux-framework/flux-sched#1452.

Yes, the initial load absolutely has to contain them. For some of the options like the id-list format we’d have to use a different initial load format. The solution for children is to allow them to request the full initial input from their parent in addition to the scheduling key, the id-list is again an example where there really isn’t another way to make that work….

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grondo commented on issue flux-framework/flux-core#7546.

BTW, the IMP itself isn’t aware of how the imp-exec-helper obtains the input to the IMP. For now we could fetch DeviceAllow and DevicePolicy from systemd (perhaps rewrite to some input more suitable for use with the IMP so we don’t have to re-implement systemd DeviceAllow parsing), in the future if this data needs to come from outside systemd, an alternate method could replace or even be added to the helper. …

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cbritopacheco commented on issue cbritopacheco/rodin#232.

@copilot I meant you should refactor the CCMLC2014 folder code to remove the crude names and also add extensive doxygen documentation. This is the paper on which it’s based on: …

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jeremylt commented on issue CEED/libCEED#1951.

Awesome. You can use search=t129 to run the new test specifically …

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cyrush commented on issue visit-dav/visit#20920.

@biagas thanks for look into this. …

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v-dobrev commented on issue mfem/mfem#5306.

Merged in next for testing……

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tzanio commented on issue mfem/mfem#5309.

This PR is now under review (see the table in the PR description). To help with the review process, please do not force push to the branch….

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gardner48 commented on issue llnl/sundials#918.

> We could also move the CONTRIBUTING.md if we renamed doc/ to docs/ (see https://docs.github.com/en/communities/setting-up-your-project-for-healthy-contributions/setting-guidelines-for-repository-contributors). I don’t think we want to move it into .github as it is more broadly applicable. …

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JustinPrivitera commented on issue llnl/conduit#1581.

Annotate more than just forall…

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artv3 commented on issue llnl/RAJA#2006.

> I played with making a range type that could have any of begin, end, and stride be runtime or compile time constants. Is that something that you are interested in @artv3. Right now you construct the range in the lambda so the compiler knows that begin is a constant 0, but if you constructed the range outside of the lambda and captured it then the compiler would not know that begin is a constant. If you had a range type that could have any of the parameters be constant or runtime could fix that. …

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garlick open issue flux-framework/flux-sched#1451.

allow el cap rabbit pool resources to be used without quantization

Problem: currently el capitan rabbit allocations are quantized to arbitrary ssd chunks, where each job exclusively allocates one ore mores ssds to get to the required capacity. It would be better if there were one storage pool per rabbit that can be allocated in arbitrary quantities….View Comment

chu11 commented on issue flux-framework/flux-core#7547.

hmmm all the builders failed, I seemed to have introduced a memleak. …

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