Open Source Heartbeat: Open Source Heartbeat

Open Source Heartbeat

vsoch commented on issue yoonho/flux-qrmi#2.

Understood, thank you @ohtanim….

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vsoch commented on issue singularityhub/shpc-registry#480.

I do think if we used the docker api proper (instead of falling back to my lazy approach) we might get more fine tuned control of the requests. That direction sounds good to me!…

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tzanio commented on issue mfem/mfem#5124.

Merged in next for testing……

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BradWhitlock commented on issue llnl/axom#1860.

I’m pursuing an idea I had about reusing the MatsetView types to traverse the mixed field data since their representation changes depending on the structure of the matset….

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vsoch commented on issue flux-framework/flux-core#7606.

Excellent - looks good! …

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grondo commented on issue flux-framework/flux-core#7606.

Should be fixed now: flux-framework/flux-sched#1480…

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chu11 commented on issue flux-framework/flux-core#7594.

just re-pushed, handling many of the corner cases that existed in the initial work. removing WIP …

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JustinPrivitera commented on issue visit-dav/visit#20950.

venn should be robust to that case: https://github.com/llnl/conduit/issues/1600…

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BradWhitlock commented on issue visit-dav/visit#20950.

I think the empty “background” material is the problem, which came from calling venn() with radius 5. It turns out a more suitable value is something like 0.25. Still, it exposes bug dealing with bad data….

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alecbcs commented on issue spack/spack-packages#4550.

@spackbot run pipeline…

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becker33 commented on issue spack/spack#52062.

```…

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imguoguo closed issue sipeed/picoclaw#2784.

[BUG] README Baidu Search Free Tier update

https://github.com/sipeed/picoclaw#-web-search…View Comment

uvilla commented on issue pecos/tps#325.

A possibility cleaner way is warning suppression in valgrind. …

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hppritcha commented on issue open-mpi/ompi#13847.

related to #13879 …

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BradWhitlock open issue llnl/conduit#1602.

Flesh out Blueprint protocol documentation for mixed-vars / material-dependent fields

The documentation for making mixed-variables and material-dependent fields is very sparse. It would be helpful to have examples of these things, similar to what was done for the various matset flavors….View Comment

JustinPrivitera commented on issue llnl/conduit#1601.

We could also have a table of contents at the top like we did for the X Ray Image Query: https://visit-sphinx-github-user-manual.readthedocs.io/en/develop/using_visit/Quantitative/XRayImageQuery.html…

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vsoch open issue flux-framework/flux-docs#323.

License: consider creative commons for docs

From the Linux Foundation:…View Comment

jedbrown commented on issue OSGeo/gdal#14500.

> As long as you put part of the book in the input prompt. …

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jeremylt commented on issue CEED/libCEED#1963.

Checked CI locally - happy to merge if you want me to

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cyrush commented on issue visit-dav/visit#20946.

I am not sure how robust this is b/c we dont test it….

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becker33 commented on issue spack/spack-packages#4652.

@climbfuji can you try to create a more human-readable PR title in the future?…

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tgamblin commented on issue spack/spack#52137.

Closing this until we can revisit it as an additional configuration option to control what failures are acceptable. We may also revisit making a 404 on URL fetch acceptable, but this is not critical for CI since GitLab’s reliability has been improved….

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alecbcs commented on issue llnl/hubcast-test#5.

@lc-hubcast help…

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cyrush open issue llnl/conduit#1597.

ci issues with umpire symbols

```…View Comment

imguoguo commented on issue imguoguo/Comments#38.

> @fktoday…

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garlick closed issue flux-framework/flux-sched#1306.

json encoding inception with fluxion resource!

I noticed some unintentional turduckens here while playing with the tracing tools in flux-framework/flux-core#6345. …View Comment

jameshcorbett open issue flux-framework/flux-sched#1479.

Make bulk property-update RPCs send partial success messages

@trws noted in #1463 that if a bulk set-property or remove-property RPC fails,…View Comment

wihobbs open issue flux-framework/flux-sched#1477.

fluxion encodes some json as strings, resulting message is inconvenient to trace

Fluxion has a tendency in some callbacks to encode json as a string, which must then later be decoded (possibly taking up unnecessary cycles). As an example:…View Comment

trws commented on issue flux-framework/flux-sched#1477.

sigh

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trws commented on issue flux-framework/flux-core#7608.

Maybe rhel9 or 10 equivalent for the TOSS connection? Otherwise I’d probably default to whatever the current Ubuntu LTS is….

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jameshcorbett commented on issue flux-framework/flux-core#7591.

> > FWIW, after messing around for a while, the best thing I could come up with to remove a hard dependency on ply was to move the ply imports from the top of modules into the bodies of every function or method that uses it. :( …

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cmoussa1 commented on issue flux-framework/flux-accounting#858.

OK, so I’ve been messing around with a redesign for the better part of a week now and I think I’ve actually been able to get somewhere significant. The overhaul has been quite a lot of work thinking about a) how to make previously-hard-coded parameters configurable and extensible, and b) how to update an already-existing flux-accounting database to adopt the new design….

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cyrush open issue Alpine-DAV/ascent#1719.

unexpected visualstudio update in github actions windows runner

We are using the windows-2025 gh-actions runner. …View Comment

gardner48 open issue llnl/sundials#926.

[BUG] Single precision with SuperLU_DIST could be supported</p><small>When I try to CMake SUNDIALS with single precision and have it use SuperLU_DIST it errors with ...</small><a href="https://github.com/llnl/sundials/issues/926" target="_blank">View Comment</a>

vsoch commented on issue llnl/cardioid#17.

Thanks! This is more than 3 years old and we finished and published the work. Closing….

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samuelkgutierrez commented on issue hpc/quo-vadis#452.

qv_scope_split() is more expressive because it has an npieces parameter that split_at() does not….

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garlick commented on issue flux-framework/flux-core#7605.

```…

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vsoch commented on issue cosimameyer/awesome-pyladies-creations#112.

Yes of course! Thank you for the showcase!

v-dobrev open issue mfem/mfem#5275.

cudaErrorInvalidDevice abort in GPU builds due to missing device migration in HypreParMatrix::DropSmallEntries

When running a GPU-accelerated build (CUDA + Thrust), calling HypreParMatrix::DropSmallEntries results in a poisoned CUDA context that causes subsequent device operations to fail with a hardware abort. …View Comment

adrienbernede commented on issue llnl/radiuss-shared-ci#76.

In facts, I have mixed feelings: from the components perspective, I like how everything is explicitly stated in the inputs. But in the underlying setup, the perf processing job extends caliper to github, which extends convert to github, which itself has not script because the script should be specified by the user… But again, the components inputs makes the requirements clear….

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wihobbs open issue flux-framework/flux-core#7601.

job-manager: plugins/validate-duration.c && update.c -- do they really need the full resource.R?

Some recent testing (see #7598 and flux-sched#1471) show that there are a few places where the resource.R is still fetched from the KVS. When that’s 202Mb, whatever’s doing it slows down a lot. …View Comment

wihobbs open issue flux-framework/flux-coral2#481.

callback error: `job-manager.err[0]: cray-pmi-bootstrap: Failed to post ports to job: Success`

On one of my many rounds of testing yesterday with --setattr=exec.test.run_duration, one round of 100 jobs got polluted with a ton of these messages. Apologies that I didn’t save great notes for what actual jobs caused this, though I can try to look in the persisted content-store. This didn’t show up consistently but I figured an issue would help us track and see if the codepath to cause this should be investigated….View Comment

BradWhitlock open issue mfem/mfem#5321.

MFEM appears to give incorrect quadrature-point coordinates for some custom tensor-product quadrature rules when the number of points differs by logical direction, like 5 x 3 in 2D or 5 x 3 x 2 in 3D.

- If I build a custom tensor-product IntegrationRule from unequal 1D rules and use it with Mesh::GetGeometricFactors(..., COORDINATES) on a curved quad/hex mesh, the physical quadrature-point locations can…View Comment

tomstitt commented on issue mfem/mfem#5309.

While I was trying to make a standalone reproducer I found that hipsparseSpMV_preprocess is not always needed, you can make a basic driver that works without it. I’m not sure yet if it’s the structure of our matrices, something about the function call ordering, or something else. I will update when I know more. …

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milroy commented on issue flux-framework/flux-sched#1466.

> We are maybe trying to get https://github.com/flux-framework/flux-sched/pull/1465 in as well @milroy ? …

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tzanio commented on issue mfem/mfem#5230.

This PR is now under review (see the table in the PR description). To help with the review process, please do not force push to the branch….

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cyrush commented on issue visit-dav/visit#20944.

Thanks for sharing, this pretty crazy that the compiler / system headers may be incompatible with the system standard libs. …

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alecbcs commented on issue spack/spack-packages#4545.

@spackbot run pipeline…

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tgamblin commented on issue spack/spack#52205.

I also like deprecated() over deprecated=True, for the cases above. How, though, would you handle the mappings in #52112? I suppose you could still have an optional replaecment:…

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hppritcha commented on issue open-mpi/ompi#12458.

Should we keep this PR open?…

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v-dobrev commented on issue mfem/mfem#5306.

Re-merged in next for testing……

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cyrush commented on issue llnl/conduit#1594.

@Arlie-Capps let me know if these fixes resolve the fmt issues you encountered…

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BradWhitlock open issue llnl/axom#1693.

Add support for uniform grid sampling in sampling shaper

The query points in our sampling-based workflow are currently defined by Gauss-Legendre quadrature node locations within each cell….View Comment

chu11 open issue flux-framework/rfc#517.

rfc23: add year suffix?

In https://github.com/flux-framework/flux-core/issues/6132, there is a configuration being developed for preserving history of drain/undrain events….View Comment

grondo closed issue flux-framework/flux-sched#1469.

loading `sched-fluxion-resource` with `load-format=hwloc` causes interner abort

I’m not even sure if this is supported, but I’m trying to use match-policy=locality on a single node and wanted to see if loading the hwloc XML topology would work, but ran into this issue immediately:…View Comment

trws commented on issue flux-framework/flux-sched#1449.

Same, that’s the normal way we do it in testing and everywhere else. All I can think is maybe we have a race between the hello protocol and the free event for the job. I’m trying to work out how to test it reliably, but it’s a tricky thing to pin down….

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grondo commented on issue flux-framework/flux-core#7589.

Well, the obvious thing to do is to add a configuration flag to the job-list module that puts it in private mode, effectively adding and user:<requestor> to the constraints used to generate responses. Do you know if private-mode should also secure job-list.job-stats so guest users can’t see the general job stats? (shows counts of all jobs in all states) My guess is yes….

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garlick commented on issue flux-framework/flux-core#7500.

As I’m working through a subclassing experiment I’m realizing this doesn’t quite solve the problem. I’ll close this PR for now and open some more once the design is solid….

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trws commented on issue flux-framework/flux-coral2#473.

Ok, we could move it to a resolved state on the board or similar I guess. …

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cmoussa1 commented on issue flux-framework/flux-accounting#863.

Looks good to me! Thanks bot…

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adrienbernede open issue llnl/radiuss-shared-ci#75.

Manually triggering a flux job alone results in using the default queue instead of CI specific one.

Current workaround: manually trigger the shared alloc job first and on completion trigger the desired job….View Comment

JustinPrivitera commented on issue llnl/conduit#1111.

#1593…

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markcmiller86 commented on issue llnl/Silo#535.

> Do you have a rough guess on when there will be a tagged release that incorporates this fix?…

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artv3 commented on issue llnl/RAJA#2021.

> > > I am concerned that people will use this without knowing that its doing expensive div/mod calculations and see that it performs more poorly than a native cuda/hip 2d or 3d kernel. Would it make sense to have policies that allow mapping to 2d or 3d kernels. …

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tomstitt commented on issue llnl/RAJA#2021.

> > I am concerned that people will use this without knowing that its doing expensive div/mod calculations and see that it performs more poorly than a native cuda/hip 2d or 3d kernel. Would it make sense to have policies that allow mapping to 2d or 3d kernels….

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imguoguo commented on issue imguoguo/picoclaw_docs#1.

/fix

wihobbs open issue flux-framework/rfc#516.

version number is screwed up in webpage names

Somewhere along the way, 0.13.0 got baked into our metadata: …View Comment

garlick commented on issue flux-framework/flux-sched#1449.

> Could there be a race condition though that something isn’t ready yet for the next module to be loaded?…

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wihobbs commented on issue flux-framework/flux-sched#1468.

I think I meant to say jgf_shorthand. jgf needs to be documented too……

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milroy commented on issue flux-framework/flux-sched#1465.

I mistakenly created a branch on flux-sched rather than my fork. I’m deleting this PR and will open one with the changes made against my fork of flux-sched….

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wihobbs commented on issue flux-framework/flux-core#7252.

>I guess you get the honor of fixing one last merge conflict in t/Makefile.am …

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chu11 commented on issue flux-framework/flux-core#7590.

hmmm but…

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jameshcorbett commented on issue flux-framework/flux-coral2#473.

I’m not sure we should close this, but maybe we should remove it from the sprint or somehow mark it as low priority. If users/admins ever start using lots of space in persistent storages, this issue would bite us again, and we’d want a way to update the vertex sizes dynamically….

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benzwick closed issue SlicerCBM/Guix-SlicerCBM#1.

First verified end-to-end build of slicer-cbm

The package has never been built end-to-end. The current slicer-cbm.scm was written from first principles against the make-slicer-scripted-module-5.10 pattern in guix-systole, its sha256 was resolved via guix download --git, and it passes guix lint

jeremylt commented on issue CEED/libCEED#1951.

Style fix requested by CI: …

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JustinPrivitera commented on issue visit-dav/visit#20943.

From @markcmiller86 …

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becker33 commented on issue spack/spack-packages#2165.

In the long run we need to make this file properly versioned in its own repo, but I don’t think that’s a change to enforce on this PR….

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jameshcorbett commented on issue flux-framework/flux-sched#1449.

This happened again on elcap. Coincidentally (?) it was also a 64-node job. I once again could not find anything related to the job ID in f58 or decimal encodings in journalctl, and the eventlog for the job (and also for the previous job this happened to) looked normal and sensible. …

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gardner48 commented on issue erf-model/ERF#3138.

#3134 changed query to get because one input file had a typo in the prefix (tert.prob_name instead of erf.prob_name) and others files were missing the problem name both of which led to unexpected results. Throwing an error would have helped catch this sooner. It also looks like an unknown problem name could cause similar issues but catching that would require validating the input problem name. …

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JustinPrivitera open issue Alpine-DAV/ascent#1714.

macro mispelling issue for CUDA

https://github.com/Alpine-DAV/ascent/blob/959049031014123fec89f0c4eda9b01a5e519f3d/src/libs/ascent/runtimes/expressions/ascent_execution_policies.hpp#L157…View Comment

gardner48 open issue llnl/sundials#924.

SPRK partition of variables

Hello,…View Comment

artv3 commented on issue llnl/RAJAPerf#656.

To compare compiler performance consider putting together a ratio plot between a base compiler …

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jandrej commented on issue mfem/mfem#5272.

Thank you! I was just checking in, no rush….

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markcmiller86 commented on issue mfem/mfem#5318.

Is the phrase “PR authors” intended to imply human-in-the-loop (human gatekeeper)? If so maybe “human PR authors” would make that a little clearer….

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adayton1 commented on issue llnl/axom#1846.

> I think we may not want to use that flag as it is “experimental”. That is, if we can remove the host/device qualifiers on constexpr methods altogether. The compilers should be smart enough to do the right things for those….

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cyrush open issue Alpine-DAV/ascent#1712.

ascent png encoding fails with large images

testing tiled rendering with 16192x16192 output image…View Comment

jedbrown commented on issue CSStipendRankings/CSStipendRankings#89.

Not sure what Claude has to do with this. I hope it isn’t being treated as an epistemic authority on which universities charge a fee. As documented previously, the size of the fee can vary widely (though my institution isn’t as shamefully bad as it once was). Anyway, thanks for adding the tag….

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jedbrown commented on issue openjournals/joss-reviews#7716.

Hi @abaer-kit, I see that some of the issues on your repository that were opened via this review are still open. Could you determine if they are complete and close if so? And let us know if there is anything you understand remains to be addressed?…

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btalamini commented on issue llnl/smith#1585.

@white238 and @tupek2 , I modified this. Would you review again? …

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BradWhitlock open issue llnl/axom#1628.

Improve tranformation support for Klee's Geometry operators

Klee shapes have operators that apply transformations (scale, translate, rotate, …) to their geometry….View Comment

markcmiller86 commented on issue llnl/Silo#543.

FYI…in #548, I did fix the issue on main your experience alerted me to and I mentioned above….

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grondo commented on issue flux-framework/flux-core#7550.

This could be solved by the mapper introduced in #7566, since it is able to set or adjust arbitrary systemd properties per job, and has access to the locally assigned resources. As a first cut, the default HwlocMapper could scale MemoryMax by the ratio of cores allocated to the job vs available cores, e.g. if MemoryMax=98% in the config, and a job is assigned half the cores, the mapper could return MemoryMax=49%. …

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garlick commented on issue flux-framework/flux-core#7568.

Ok, on reflection, your instincts are I think correct. I’ll move the “normalization”, the standard device list, etc (basically what systemd does) over to flux-security and leave the helper with a simpler job: fetch properties, set options….

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cbritopacheco commented on issue cbritopacheco/rodin#244.

@copilot …

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jeremylt commented on issue CEED/libCEED#1951.

This is looking pretty good. Did you want to take a try at adding this to the CUDA ref backend?…

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cyrush open issue visit-dav/visit#20935.

feedback for new mfem LOR support

From Veselin:…View Comment

markcmiller86 commented on issue visit-dav/visit#20934.

Just curious if this general section on File Locations might address some of the concern and whether this specific secrtion on debug logs address specific questions about that….

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alecbcs commented on issue spack/spack-packages#4373.

Hi all, this PR should now be ready for a final review and merge. The secrets have been created in the repository and AWS has been configured for OIDC authentication with GitHub….

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v-dobrev commented on issue mfem/mfem#5312.

This PR is now under review (see the table in the PR description). To help with the review process, please do not force push to the branch….

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dylan-copeland commented on issue mfem/mfem#5313.

As @v-dobrev mentioned, mesh-explorer has features to help refine (uniformly) and convert the mesh. If you would like more control over refinement, Mesh::KnotInsert gives you complete control over the number of elements and their spacing, for each KnotVector. If you would like to use lower than 4th-order, it would be best to refine the mesh fully with order 4 and then convert to lower order (e.g. mesh-explorer option ‘c’)….

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